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The map label for this gene is desC

Identifier: 37520804

GI number: 37520804

Start: 1312274

End: 1313095

Strand: Direct

Name: desC

Synonym: gvip170

Alternate gene names: NA

Gene position: 1312274-1313095 (Clockwise)

Preceding gene: 37520803

Following gene: 37520807

Centisome position: 28.17

GC content: 62.9

Gene sequence:

>822_bases
ATGACCGCCCAGAGCCCTGCCACCCAGGCCACGCCTATCTCCTGGGTCTTCGTCGGTTTTATGGCCTTTATTCACCTTGG
TGCCCTGGCGGCGCTGTGGCAGTTTTCGTGGTCGGCCCTGGCGCTGGCCATTTTTTTGCACTGGGCGCTCGGCTGCCTGG
GGATCACCCTCGGTTTTCACCGTCTGCTCAGCCACCGCAGCTTCACGGTGCCCAAGCCGCTTGAATATTTCCTGGCCTTG
CTCGGCACTCTATGCCTGCAAGGTGGTCCCGTCCTCTGGGTGGCGCACCACCGCCTGCACCACGCCCACTCCGACACCGA
GGCCGACCCGCACGATTCGAACCGAGGTTTTTGGTGGAGCCACTGGGGCTGGATGTTCTACATGCCCGAGGAGCGGCTCA
ACTTCGATCACTACTCGCGCTACGCCAAGGATCTGGCCCGCGACCCGGTGCACCGGTTTCTCAACCGCAATATGATCCCT
CTCCAGTTGGCCTTTGCAGCGCTTTTGTACCTGTTGGGCGGCTGGCCGTTCGTGCTGTGGGGCATCTTCGTGCGGCTGGT
GGTCGTATTCCACTGCACCTGGCTGATCAATTCCGCCTGCCACCAGTGGGGCTACCGCAGCCACCAGACCGACGACCACT
CCACCAACCTCTGGTGGGCGGCGATCCTGGCCTACGGTGAAGGCTGGCACAACAACCACCACGCCATGCCGCGCTCTGCC
CGCCACGGCCTTGCCTGGTGGGAGATCGACGTCACCTGGAGTGTGATCTGGATACTCAGCAAGCTCGGCCTGGCCCGCAA
CGTCCAATTGCCGACCTCTTAG

Upstream 100 bases:

>100_bases
AGGCGATTGTCGCCGATCTCGGCACCGGCAGGGCGACCGGGCCGACAGACGAACAATGATATCCTGGGAAAGTGTGCAAA
CAAACTTTACCGTGGAGCAT

Downstream 100 bases:

>100_bases
TCGTGATGGGTTCGCTCCAGAAGCGAGAAATCCGTGCAAATCAACTTCCATGCGACGCCCCCCGGAGCGTTTGCTGTAGA
GGGGGCCAATGTTCTCACCG

Product: delta-9 acyl-lipid desaturase

Products: NA

Alternate protein names: Fatty Acid Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Acyl-CoA Desaturase; Fatty Acid Desaturase Subfamily; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty Acid Desaturase Domain Protein; Fatty Acid Desaturase Family Proteiin; Stearoyl-CoA Desaturase; Fatty Acid Desaturase Family Protein; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Fatty Acid Desaturase Protein; Delta-9 Acyl-Lipid Desaturase; Delta 9 Acyl-Lipid Desaturase; Membrane-Bound Fatty Acid Desaturase; Long Chain Acyl-CoA Desaturase; Delta-9 Fatty Acid Desaturase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Fatty Acid-CoA Desaturase; Acyl-Coa Desaturase; Delta-9-Acyl-Lipid Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Eucaryotic Stearoyl-CoA 9-Desaturase

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTAQSPATQATPISWVFVGFMAFIHLGALAALWQFSWSALALAIFLHWALGCLGITLGFHRLLSHRSFTVPKPLEYFLAL
LGTLCLQGGPVLWVAHHRLHHAHSDTEADPHDSNRGFWWSHWGWMFYMPEERLNFDHYSRYAKDLARDPVHRFLNRNMIP
LQLAFAALLYLLGGWPFVLWGIFVRLVVVFHCTWLINSACHQWGYRSHQTDDHSTNLWWAAILAYGEGWHNNHHAMPRSA
RHGLAWWEIDVTWSVIWILSKLGLARNVQLPTS

Sequences:

>Translated_273_residues
MTAQSPATQATPISWVFVGFMAFIHLGALAALWQFSWSALALAIFLHWALGCLGITLGFHRLLSHRSFTVPKPLEYFLAL
LGTLCLQGGPVLWVAHHRLHHAHSDTEADPHDSNRGFWWSHWGWMFYMPEERLNFDHYSRYAKDLARDPVHRFLNRNMIP
LQLAFAALLYLLGGWPFVLWGIFVRLVVVFHCTWLINSACHQWGYRSHQTDDHSTNLWWAAILAYGEGWHNNHHAMPRSA
RHGLAWWEIDVTWSVIWILSKLGLARNVQLPTS
>Mature_272_residues
TAQSPATQATPISWVFVGFMAFIHLGALAALWQFSWSALALAIFLHWALGCLGITLGFHRLLSHRSFTVPKPLEYFLALL
GTLCLQGGPVLWVAHHRLHHAHSDTEADPHDSNRGFWWSHWGWMFYMPEERLNFDHYSRYAKDLARDPVHRFLNRNMIPL
QLAFAALLYLLGGWPFVLWGIFVRLVVVFHCTWLINSACHQWGYRSHQTDDHSTNLWWAAILAYGEGWHNNHHAMPRSAR
HGLAWWEIDVTWSVIWILSKLGLARNVQLPTS

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI53759151, Length=278, Percent_Identity=31.6546762589928, Blast_Score=130, Evalue=9e-31,
Organism=Homo sapiens, GI148596961, Length=243, Percent_Identity=32.9218106995885, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI148596938, Length=165, Percent_Identity=37.5757575757576, Blast_Score=96, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17561774, Length=244, Percent_Identity=33.6065573770492, Blast_Score=135, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI17561776, Length=241, Percent_Identity=32.3651452282158, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17540878, Length=249, Percent_Identity=30.1204819277108, Blast_Score=123, Evalue=8e-29,
Organism=Saccharomyces cerevisiae, GI6321383, Length=253, Percent_Identity=34.3873517786561, Blast_Score=139, Evalue=4e-34,
Organism=Drosophila melanogaster, GI21358573, Length=266, Percent_Identity=32.7067669172932, Blast_Score=130, Evalue=7e-31,
Organism=Drosophila melanogaster, GI24646295, Length=277, Percent_Identity=30.6859205776173, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24646500, Length=284, Percent_Identity=31.3380281690141, Blast_Score=128, Evalue=3e-30,
Organism=Drosophila melanogaster, GI24646303, Length=270, Percent_Identity=31.1111111111111, Blast_Score=127, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24646299, Length=270, Percent_Identity=31.1111111111111, Blast_Score=127, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24646305, Length=270, Percent_Identity=31.1111111111111, Blast_Score=127, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24646301, Length=270, Percent_Identity=31.1111111111111, Blast_Score=127, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24646297, Length=270, Percent_Identity=31.1111111111111, Blast_Score=127, Evalue=6e-30,
Organism=Drosophila melanogaster, GI21358571, Length=279, Percent_Identity=30.1075268817204, Blast_Score=121, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24662393, Length=273, Percent_Identity=27.4725274725275, Blast_Score=107, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31562; Mature: 31430

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQSPATQATPISWVFVGFMAFIHLGALAALWQFSWSALALAIFLHWALGCLGITLGFH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLSHRSFTVPKPLEYFLALLGTLCLQGGPVLWVAHHRLHHAHSDTEADPHDSNRGFWWS
HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCEEEE
HWGWMFYMPEERLNFDHYSRYAKDLARDPVHRFLNRNMIPLQLAFAALLYLLGGWPFVLW
CCCEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHH
GIFVRLVVVFHCTWLINSACHQWGYRSHQTDDHSTNLWWAAILAYGEGWHNNHHAMPRSA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
RHGLAWWEIDVTWSVIWILSKLGLARNVQLPTS
HCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TAQSPATQATPISWVFVGFMAFIHLGALAALWQFSWSALALAIFLHWALGCLGITLGFH
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLSHRSFTVPKPLEYFLALLGTLCLQGGPVLWVAHHRLHHAHSDTEADPHDSNRGFWWS
HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCEEEE
HWGWMFYMPEERLNFDHYSRYAKDLARDPVHRFLNRNMIPLQLAFAALLYLLGGWPFVLW
CCCEEEEECHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHH
GIFVRLVVVFHCTWLINSACHQWGYRSHQTDDHSTNLWWAAILAYGEGWHNNHHAMPRSA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH
RHGLAWWEIDVTWSVIWILSKLGLARNVQLPTS
HCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA