Click here to switch to the map view.

The map label for this gene is phoD [H]

Identifier: 37520767

GI number: 37520767

Start: 1275761

End: 1277323

Strand: Direct

Name: phoD [H]

Synonym: glr1198

Alternate gene names: 37520767

Gene position: 1275761-1277323 (Clockwise)

Preceding gene: 37520762

Following gene: 37520774

Centisome position: 27.38

GC content: 65.26

Gene sequence:

>1563_bases
ATGGCGTTTGATCGGACTTCATTGATGCGATTGTTCGCCGCCGCCACAGGCCGCAGGCGGTTTCTGGCCGCTGTGGGTGC
CTTCGGGGGGGCGGCCCTGGTGCAGCGGGTCCATGCTGCTGAGGCCGGAATTTTCAGCCTCGGGGTAGCCTCCGGCGATC
CACTCGCCGACGGTGTTGTGCTCTGGACGCGCCTGGTACCGAAACCGCTGGGTGGAGGCGGCATGGGCACGCGGCCGGTA
CCGGTGCAGTGGCAGGTGGCCAGGGATGCGAATATGCGCCAGGTGCTCCAGCGCGGCACGGTGTTGGCCCTGCCGGAGAT
GGCCCACTCGGTGCACGTCGAAGTGCACGGCCTGGAGCCTGCCCGCTCTTACTGGTACCAATTCAAAGCCGGTTCCGAGG
TGAGCCCTGTGGGCCGTACCCGCACCGCACCCGCTCCGGGCGCGCGGGTGGAGCGCCTGCGCTTTGCCTTCGCTTCCTGC
CAGCACTACGAACACGCCTACTACAGTGCTTACCGGGACATGGCCGCGGTGGAGGATCTCGATTTTGTCGTCCACCTGGG
CGATTACATCTACGAGCGGGGACCGACGGCTAACCAACCGCGCAAGCACGACGGGCCGGAGATTACCACCCTGGAGCAGT
ACCGCAACCGCTACGCGCTCTACAAGCTCGATCCGTCTTTGCAAGCGGCCCACGCCGCCGCCCCCTGGATCGTCACCTGG
GACGATCACGAGGTGGACAACAACTACGCAACCCTCATCCCCGAGGACGACCAGACCCCGCAGGCCTTCGCCGCCCGCCG
CGCCGCCGCGTACCAGGCTTACTACGAGCACATGCCCCTGCGCCTTGTCTCGTTGCCCAAGGGCCCCGATTTGCAACTCT
TTCGCCGCTTCACCATGGGCGATCTGGCCGAATTGCACGTGCTCGACACCCGCCAGTACCGAAGCGACCAGCCCTGCGGC
GATCGGCTGAAGCCCCGCTGCCCGGAAGCGCTTGCCGAGGCCGCTTCGATGCTGGGGGACCGGCAGGAGCGCTGGCTGCT
GGCGGGGCTGAACCTCTCGCGGGCGCGCTGGAATGTGATGGCCCAGCAGACGGTGATGGCCCAGTTCGACGTCGATCCGC
GCCCGGAATCGGCACTATTCAACCTCGATCAGTGGGACGGCTACGTGGCGGCCCGCGAGCGGCTGCTGCGCTACCTTGCC
GCCCGCCGCCCCGCCAACCCGGTCGTGATCACCGGCGACATCCATTCCAACTGGGTCTTCGATCTCAAGTCCGATTTCGC
CAATCCCGACTCAGCCACCGTCGCCACCGAATTTGCCGGAACCTCGATCAGTTCCAACTTCTCAAAGGAATTCACTGCCC
AACTCACGGCGGCGATGCCTTCCAACCCCCATACCAAATTCTTCAACGGCGACCAGCGGGGTTACACCCTGTGCACGATC
ACCCCCAAACAATGGCAAACCGACCTGCGCGTGGTCACCAACCCGATCGACCCCGAGAGCACCGTGAGTACCCTTGCCTC
CTTTGTGGTTGAGGACGGCCGACCAGGGGCTCAGAAGATTTAG

Upstream 100 bases:

>100_bases
GGTCCGTACCCGCCCGGGTGGCGGGTGCTGCCCGAGACACTCCCTGGGCGCTGAACTTGGTTAGACTCGTGCGCGCAGTC
TTCGCGAAATCCCAGTTTTT

Downstream 100 bases:

>100_bases
CAAGTTCGATGGCTACGGTGCATCCGGTCGCACCAATTTCGTGATGGTAGTCATTGGCAGAAACAAGCGTTGAGTGGAAT
CGAGAAATGGTACGAATCCA

Product: phosphodiesterase/alkaline phosphatase D

Products: NA

Alternate protein names: APaseD [H]

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MAFDRTSLMRLFAAATGRRRFLAAVGAFGGAALVQRVHAAEAGIFSLGVASGDPLADGVVLWTRLVPKPLGGGGMGTRPV
PVQWQVARDANMRQVLQRGTVLALPEMAHSVHVEVHGLEPARSYWYQFKAGSEVSPVGRTRTAPAPGARVERLRFAFASC
QHYEHAYYSAYRDMAAVEDLDFVVHLGDYIYERGPTANQPRKHDGPEITTLEQYRNRYALYKLDPSLQAAHAAAPWIVTW
DDHEVDNNYATLIPEDDQTPQAFAARRAAAYQAYYEHMPLRLVSLPKGPDLQLFRRFTMGDLAELHVLDTRQYRSDQPCG
DRLKPRCPEALAEAASMLGDRQERWLLAGLNLSRARWNVMAQQTVMAQFDVDPRPESALFNLDQWDGYVAARERLLRYLA
ARRPANPVVITGDIHSNWVFDLKSDFANPDSATVATEFAGTSISSNFSKEFTAQLTAAMPSNPHTKFFNGDQRGYTLCTI
TPKQWQTDLRVVTNPIDPESTVSTLASFVVEDGRPGAQKI

Sequences:

>Translated_520_residues
MAFDRTSLMRLFAAATGRRRFLAAVGAFGGAALVQRVHAAEAGIFSLGVASGDPLADGVVLWTRLVPKPLGGGGMGTRPV
PVQWQVARDANMRQVLQRGTVLALPEMAHSVHVEVHGLEPARSYWYQFKAGSEVSPVGRTRTAPAPGARVERLRFAFASC
QHYEHAYYSAYRDMAAVEDLDFVVHLGDYIYERGPTANQPRKHDGPEITTLEQYRNRYALYKLDPSLQAAHAAAPWIVTW
DDHEVDNNYATLIPEDDQTPQAFAARRAAAYQAYYEHMPLRLVSLPKGPDLQLFRRFTMGDLAELHVLDTRQYRSDQPCG
DRLKPRCPEALAEAASMLGDRQERWLLAGLNLSRARWNVMAQQTVMAQFDVDPRPESALFNLDQWDGYVAARERLLRYLA
ARRPANPVVITGDIHSNWVFDLKSDFANPDSATVATEFAGTSISSNFSKEFTAQLTAAMPSNPHTKFFNGDQRGYTLCTI
TPKQWQTDLRVVTNPIDPESTVSTLASFVVEDGRPGAQKI
>Mature_519_residues
AFDRTSLMRLFAAATGRRRFLAAVGAFGGAALVQRVHAAEAGIFSLGVASGDPLADGVVLWTRLVPKPLGGGGMGTRPVP
VQWQVARDANMRQVLQRGTVLALPEMAHSVHVEVHGLEPARSYWYQFKAGSEVSPVGRTRTAPAPGARVERLRFAFASCQ
HYEHAYYSAYRDMAAVEDLDFVVHLGDYIYERGPTANQPRKHDGPEITTLEQYRNRYALYKLDPSLQAAHAAAPWIVTWD
DHEVDNNYATLIPEDDQTPQAFAARRAAAYQAYYEHMPLRLVSLPKGPDLQLFRRFTMGDLAELHVLDTRQYRSDQPCGD
RLKPRCPEALAEAASMLGDRQERWLLAGLNLSRARWNVMAQQTVMAQFDVDPRPESALFNLDQWDGYVAARERLLRYLAA
RRPANPVVITGDIHSNWVFDLKSDFANPDSATVATEFAGTSISSNFSKEFTAQLTAAMPSNPHTKFFNGDQRGYTLCTIT
PKQWQTDLRVVTNPIDPESTVSTLASFVVEDGRPGAQKI

Specific function: Unknown

COG id: COG3540

COG function: function code P; Phosphodiesterase/alkaline phosphatase D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PhoD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018946
- InterPro:   IPR006311 [H]

Pfam domain/function: PF09423 PhoD [H]

EC number: =3.1.3.1 [H]

Molecular weight: Translated: 57880; Mature: 57749

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDRTSLMRLFAAATGRRRFLAAVGAFGGAALVQRVHAAEAGIFSLGVASGDPLADGVV
CCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHH
LWTRLVPKPLGGGGMGTRPVPVQWQVARDANMRQVLQRGTVLALPEMAHSVHVEVHGLEP
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCEEEECHHCCEEEEEEECCCH
ARSYWYQFKAGSEVSPVGRTRTAPAPGARVERLRFAFASCQHYEHAYYSAYRDMAAVEDL
HHHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFVVHLGDYIYERGPTANQPRKHDGPEITTLEQYRNRYALYKLDPSLQAAHAAAPWIVTW
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCHHHHHCCCCEEEEC
DDHEVDNNYATLIPEDDQTPQAFAARRAAAYQAYYEHMPLRLVSLPKGPDLQLFRRFTMG
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHC
DLAELHVLDTRQYRSDQPCGDRLKPRCPEALAEAASMLGDRQERWLLAGLNLSRARWNVM
CHHHEEEEECHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
AQQTVMAQFDVDPRPESALFNLDQWDGYVAARERLLRYLAARRPANPVVITGDIHSNWVF
HHHHHHEEECCCCCCCHHEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEE
DLKSDFANPDSATVATEFAGTSISSNFSKEFTAQLTAAMPSNPHTKFFNGDQRGYTLCTI
EEHHHCCCCCCCEEEEHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
TPKQWQTDLRVVTNPIDPESTVSTLASFVVEDGRPGAQKI
CHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AFDRTSLMRLFAAATGRRRFLAAVGAFGGAALVQRVHAAEAGIFSLGVASGDPLADGVV
CCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHH
LWTRLVPKPLGGGGMGTRPVPVQWQVARDANMRQVLQRGTVLALPEMAHSVHVEVHGLEP
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCEEEECHHCCEEEEEEECCCH
ARSYWYQFKAGSEVSPVGRTRTAPAPGARVERLRFAFASCQHYEHAYYSAYRDMAAVEDL
HHHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFVVHLGDYIYERGPTANQPRKHDGPEITTLEQYRNRYALYKLDPSLQAAHAAAPWIVTW
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEECCCHHHHHCCCCEEEEC
DDHEVDNNYATLIPEDDQTPQAFAARRAAAYQAYYEHMPLRLVSLPKGPDLQLFRRFTMG
CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHC
DLAELHVLDTRQYRSDQPCGDRLKPRCPEALAEAASMLGDRQERWLLAGLNLSRARWNVM
CHHHEEEEECHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
AQQTVMAQFDVDPRPESALFNLDQWDGYVAARERLLRYLAARRPANPVVITGDIHSNWVF
HHHHHHEEECCCCCCCHHEECCHHHCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEE
DLKSDFANPDSATVATEFAGTSISSNFSKEFTAQLTAAMPSNPHTKFFNGDQRGYTLCTI
EEHHHCCCCCCCEEEEHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
TPKQWQTDLRVVTNPIDPESTVSTLASFVVEDGRPGAQKI
CHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760916; 9384377; 7704254; 25878 [H]