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The map label for this gene is ycf58 [H]

Identifier: 37520760

GI number: 37520760

Start: 1268528

End: 1269133

Strand: Direct

Name: ycf58 [H]

Synonym: gvip161

Alternate gene names: 37520760

Gene position: 1268528-1269133 (Clockwise)

Preceding gene: 37520755

Following gene: 37520761

Centisome position: 27.23

GC content: 64.03

Gene sequence:

>606_bases
ATGGCGATCGATGCTATGGAATTTTTTCGGTTGAGTGCGGGGCGGTGGCAGTCGCAGCGGACGACCCACCACCTGGCCTT
TCGGCGCTCGGAGCTGGGTGAATCGGACATTGTGGTGGAGGCTCTGGCCGTCGGCGATCCGGCGGTAGCTGAGCTTTGTA
CCTACCATGGGGTGGATCCGGTCCTGGCGGCGGGCGGTGCCCTGGTCAGCTGGCACGGTCGCATGGACTGGGATCGCCAG
GACGAGGAGCAACACAAAGGGTCGACTGTGATGGTGATCGTTCCAGATAGCCCGGATGGCCGTCAGGGACGGCTGTTGCG
CGAGCGCGGCTACGCCGAGGTGGCGCCGGTGGCGGGGCAGTACGTCATGGACGCAGAAGACGGTCTGAACTTGATCACCG
AGTACGAGACGATGAGTGTGGTGGAGCGCTTCTGGTTTGCGGCTCCCGATTTGCGTTTGCGCACCAGCACCCTCAAGCGC
TTCGGCGGTTTTAGCACCGCGACTTTTTGCGCTGAAAAGCGCGTGGATGCGGCAGCGGCGGCCGTGGAGTCCCAGGAGCG
CACCGCCGTCCAGACCGAGCGCTCCTACTCGCTGTGGGGTTGGTAA

Upstream 100 bases:

>100_bases
TTTTAATAGCCTCCCAAACTTAGTTGCAAAAGTTCACTCGAATAGTGCAGATATGATGGGAGGGCCGGGAGGCCGGGAAC
GAGGCGGAGGAGAAATCGCA

Downstream 100 bases:

>100_bases
CTTCCCTGCTGTGGTCATCGTGAAGCACGTCACCGAATTTTTTGAGCAGTCCTTTGGCCGTTGGCGCTCCCAGCGCAGCG
GTCACCACTTGGCCTTCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MAIDAMEFFRLSAGRWQSQRTTHHLAFRRSELGESDIVVEALAVGDPAVAELCTYHGVDPVLAAGGALVSWHGRMDWDRQ
DEEQHKGSTVMVIVPDSPDGRQGRLLRERGYAEVAPVAGQYVMDAEDGLNLITEYETMSVVERFWFAAPDLRLRTSTLKR
FGGFSTATFCAEKRVDAAAAAVESQERTAVQTERSYSLWGW

Sequences:

>Translated_201_residues
MAIDAMEFFRLSAGRWQSQRTTHHLAFRRSELGESDIVVEALAVGDPAVAELCTYHGVDPVLAAGGALVSWHGRMDWDRQ
DEEQHKGSTVMVIVPDSPDGRQGRLLRERGYAEVAPVAGQYVMDAEDGLNLITEYETMSVVERFWFAAPDLRLRTSTLKR
FGGFSTATFCAEKRVDAAAAAVESQERTAVQTERSYSLWGW
>Mature_200_residues
AIDAMEFFRLSAGRWQSQRTTHHLAFRRSELGESDIVVEALAVGDPAVAELCTYHGVDPVLAAGGALVSWHGRMDWDRQD
EEQHKGSTVMVIVPDSPDGRQGRLLRERGYAEVAPVAGQYVMDAEDGLNLITEYETMSVVERFWFAAPDLRLRTSTLKRF
GGFSTATFCAEKRVDAAAAAVESQERTAVQTERSYSLWGW

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcS/CpeS biliprotein lyase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR018536 [H]

Pfam domain/function: PF09367 CpeS [H]

EC number: NA

Molecular weight: Translated: 22386; Mature: 22255

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIDAMEFFRLSAGRWQSQRTTHHLAFRRSELGESDIVVEALAVGDPAVAELCTYHGVDP
CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHEEEHHHCCCHHHHHHHHHCCCCH
VLAAGGALVSWHGRMDWDRQDEEQHKGSTVMVIVPDSPDGRQGRLLRERGYAEVAPVAGQ
HHHCCCEEEEECCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCC
YVMDAEDGLNLITEYETMSVVERFWFAAPDLRLRTSTLKRFGGFSTATFCAEKRVDAAAA
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHH
AVESQERTAVQTERSYSLWGW
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AIDAMEFFRLSAGRWQSQRTTHHLAFRRSELGESDIVVEALAVGDPAVAELCTYHGVDP
CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHEEEHHHCCCHHHHHHHHHCCCCH
VLAAGGALVSWHGRMDWDRQDEEQHKGSTVMVIVPDSPDGRQGRLLRERGYAEVAPVAGQ
HHHCCCEEEEECCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCC
YVMDAEDGLNLITEYETMSVVERFWFAAPDLRLRTSTLKRFGGFSTATFCAEKRVDAAAA
EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHH
AVESQERTAVQTERSYSLWGW
HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA