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The map label for this gene is exbD [H]

Identifier: 37520709

GI number: 37520709

Start: 1217452

End: 1217883

Strand: Reverse

Name: exbD [H]

Synonym: gll1140

Alternate gene names: 37520709

Gene position: 1217883-1217452 (Counterclockwise)

Preceding gene: 37520710

Following gene: 37520708

Centisome position: 26.14

GC content: 62.27

Gene sequence:

>432_bases
ATGGCGATACAAGCGGGTGGGAGCGGACGGGGGCGGCGCAACCGCAGCGGTTTCACCGAAATCAACATCACTCCCCTAAC
CGACGTTTTTCTGGTGCTGGTAATTATCCTGCTTATTACCGCGCCGCTCATTCAAAACAACGGCCTCAAGGTGGACCTGC
CCACCTCCGCCACCGGCGACAAGCCCGAACAGAAAAAAAGCCTGGTGGTGGGTGTCGACAAAGACGGCAAGTATTCCGTC
AACGGGGCGGTCGTCCCCGAAGCCAATCTGCTCGCCGCCCTGCGCCGCGAAGCGGAGTCCTCCGGTCAGAAAGTATTGGT
CGTGCAGGCCGACGCCGACGCCCGCCAAAAAAACGTCGTCAAGGTGATGGACGCCGCCCGTCAGGCGGGCCTGGAGAAGC
TCGTCGTCGCCACCCAACCGAGCGGCGGCTGA

Upstream 100 bases:

>100_bases
GCTGCTCAAGCTGCTGTTTCTCAACTTTGCCGACACCGCCGAATTTGAAGGCGAGGTGGTCGAAGAATCCACCATTCCCC
AGCAGTAGGAGAATTAGACG

Downstream 100 bases:

>100_bases
AGCCCGGCGCTCCGGCTTGTGGACAATGTTGTGAATTTTTGCTGAGTACTTGCCCGCCCGGATCGAGTCGCTACACTGAA
GGCGATCACCTGCGTCTTCA

Product: ExbD/TolR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAIQAGGSGRGRRNRSGFTEINITPLTDVFLVLVIILLITAPLIQNNGLKVDLPTSATGDKPEQKKSLVVGVDKDGKYSV
NGAVVPEANLLAALRREAESSGQKVLVVQADADARQKNVVKVMDAARQAGLEKLVVATQPSGG

Sequences:

>Translated_143_residues
MAIQAGGSGRGRRNRSGFTEINITPLTDVFLVLVIILLITAPLIQNNGLKVDLPTSATGDKPEQKKSLVVGVDKDGKYSV
NGAVVPEANLLAALRREAESSGQKVLVVQADADARQKNVVKVMDAARQAGLEKLVVATQPSGG
>Mature_142_residues
AIQAGGSGRGRRNRSGFTEINITPLTDVFLVLVIILLITAPLIQNNGLKVDLPTSATGDKPEQKKSLVVGVDKDGKYSVN
GAVVPEANLLAALRREAESSGQKVLVVQADADARQKNVVKVMDAARQAGLEKLVVATQPSGG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=115, Percent_Identity=32.1739130434783, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14986; Mature: 14854

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQAGGSGRGRRNRSGFTEINITPLTDVFLVLVIILLITAPLIQNNGLKVDLPTSATGD
CEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
KPEQKKSLVVGVDKDGKYSVNGAVVPEANLLAALRREAESSGQKVLVVQADADARQKNVV
CCCCCCCEEEEECCCCCEEECCEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
KVMDAARQAGLEKLVVATQPSGG
HHHHHHHHCCCCEEEEEECCCCC
>Mature Secondary Structure 
AIQAGGSGRGRRNRSGFTEINITPLTDVFLVLVIILLITAPLIQNNGLKVDLPTSATGD
EECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
KPEQKKSLVVGVDKDGKYSVNGAVVPEANLLAALRREAESSGQKVLVVQADADARQKNVV
CCCCCCCEEEEECCCCCEEECCEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
KVMDAARQAGLEKLVVATQPSGG
HHHHHHHHCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]