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The map label for this gene is 37520659

Identifier: 37520659

GI number: 37520659

Start: 1167565

End: 1168167

Strand: Direct

Name: 37520659

Synonym: glr1090

Alternate gene names: NA

Gene position: 1167565-1168167 (Clockwise)

Preceding gene: 37520655

Following gene: 37520665

Centisome position: 25.06

GC content: 64.51

Gene sequence:

>603_bases
ATGAGTACCGTTGAGGACTACGGCCACCAGGCTGGGAGCGAAGGTGATCTCACACAACTACTATGCAACTGGCAGCGCGG
AGACCGACAAGCTCTCGACCGCCTGGCACCGATTCTTGAAGGCGAACTGCGCCAACTGGCCCGGCATCTATTGCGCTCGG
AGCGCTGCGGACATACCCTGCGGCCGACGGCCCTCGTCAACGAGGCCTATCTGAGGCTGATCGACCAGCGCCAGGGCTGG
CAGAACCGCGCCCACTTTTTCGGAGTGGCGGCCCACCTGATGCGACGGGTACTGGTGGATTACGCCCGCGCCCGCGCCCG
ACACAAGCGGGGTGGCGGGGCATGCATGCTGTCTTTGGATGAATCCCTCGCGGTGGCCGCGCCAGAGGCCGATATCGATC
TGCTGATCCTGGATGCGGCGCTGGAGCGGCTGGCTATCCACTCGCCCGAGGAGTGCCGGGTGGTCGAGTTGCGTTATTTT
GCCGGTCTTACCATCTCGGAGACTGCCGAGGTACTGGGTCTGTCGGCAGGAGCGGTTACCCGCCGCTGGGCCTTCGCCCG
CGCTTGGCTGCGTCGGGAACTGGGTGATGAGACTTCCGAGTGA

Upstream 100 bases:

>100_bases
AAGTTGCCCTGGCAGGCTCCGTACACCGCCGCCTGCCCTACTGGTTCGATGTCGAGGCGTTCGAGGCTCACTTTTTCGGC
CATTGCTGGAGAACTAGCGC

Downstream 100 bases:

>100_bases
AGTGTACTTCATGCCCAAACACCTCAGCCTCCAACCGCATTTGAGCCCGGAGCAACTGTTCGAGCACTATCGCCCGGCGA
TTGGTCATTCCGTTCGCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor; Extracytoplasmic Sigma Factor ECF; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Family RNA Polymerase Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MSTVEDYGHQAGSEGDLTQLLCNWQRGDRQALDRLAPILEGELRQLARHLLRSERCGHTLRPTALVNEAYLRLIDQRQGW
QNRAHFFGVAAHLMRRVLVDYARARARHKRGGGACMLSLDESLAVAAPEADIDLLILDAALERLAIHSPEECRVVELRYF
AGLTISETAEVLGLSAGAVTRRWAFARAWLRRELGDETSE

Sequences:

>Translated_200_residues
MSTVEDYGHQAGSEGDLTQLLCNWQRGDRQALDRLAPILEGELRQLARHLLRSERCGHTLRPTALVNEAYLRLIDQRQGW
QNRAHFFGVAAHLMRRVLVDYARARARHKRGGGACMLSLDESLAVAAPEADIDLLILDAALERLAIHSPEECRVVELRYF
AGLTISETAEVLGLSAGAVTRRWAFARAWLRRELGDETSE
>Mature_199_residues
STVEDYGHQAGSEGDLTQLLCNWQRGDRQALDRLAPILEGELRQLARHLLRSERCGHTLRPTALVNEAYLRLIDQRQGWQ
NRAHFFGVAAHLMRRVLVDYARARARHKRGGGACMLSLDESLAVAAPEADIDLLILDAALERLAIHSPEECRVVELRYFA
GLTISETAEVLGLSAGAVTRRWAFARAWLRRELGDETSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22453; Mature: 22322

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVEDYGHQAGSEGDLTQLLCNWQRGDRQALDRLAPILEGELRQLARHLLRSERCGHTL
CCCHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RPTALVNEAYLRLIDQRQGWQNRAHFFGVAAHLMRRVLVDYARARARHKRGGGACMLSLD
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
ESLAVAAPEADIDLLILDAALERLAIHSPEECRVVELRYFAGLTISETAEVLGLSAGAVT
CCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCHHHHHHHHHCCCHHHH
RRWAFARAWLRRELGDETSE
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STVEDYGHQAGSEGDLTQLLCNWQRGDRQALDRLAPILEGELRQLARHLLRSERCGHTL
CCHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RPTALVNEAYLRLIDQRQGWQNRAHFFGVAAHLMRRVLVDYARARARHKRGGGACMLSLD
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
ESLAVAAPEADIDLLILDAALERLAIHSPEECRVVELRYFAGLTISETAEVLGLSAGAVT
CCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCHHHHHHHHHCCCHHHH
RRWAFARAWLRRELGDETSE
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA