Click here to switch to the map view.

The map label for this gene is 37520651

Identifier: 37520651

GI number: 37520651

Start: 1161030

End: 1161635

Strand: Reverse

Name: 37520651

Synonym: gll1082

Alternate gene names: NA

Gene position: 1161635-1161030 (Counterclockwise)

Preceding gene: 37520652

Following gene: 37520650

Centisome position: 24.93

GC content: 59.41

Gene sequence:

>606_bases
GTGAGGGCAAAGAAGCCTGAAATGGCGAAGGCGGGCGCTTCTGGAGTCCGGGGGGGCGCCGGGGAGCACGATCGCTATTT
CGTGGCGGTGCTGCCTCCAGGGGTAATTGCCCAGGAAGTCGAGCGCATCCAGCAGATTTTTGCCGACCATTTTGCCAGTT
GCGGCGCGCTGAGATCGCCACCGCATATTACGTTGCAGCCGCCTTTCGAGTGGCCCGCTGCGGAGCGGGAGTGGCTTGAG
GATTGTCTGCTGAATTTCGCCGACAAGCAGCCCCGTTTTGTTGTGGCATTGTCGGGATTTGCGGCTTTCCCGCCGCGGGT
CATCTATATCGATGTGGTAGCCAATGCAGCCCTCGAAGCTTTGCAGATCTCCCTTGCGGAGCGATTCGAGCGGGTGCTGG
GCGTCGTCGAGAGGTCGCGCTCCCGGCGTTATGTTCCCCACATGACCGTTGCTTTTCGGGATTTAACGCAGGAAAACTTT
GCGCGCGCCTGGCCTCAATTTAAAGACCGGCCGTTGTCCATGGAATTTGCGGTGCACCGTCTAACCCTGCTGATGCATGG
GGGTGGGCGCTGGCAAGTCTGCAAAGAATTTGCGTTGCAACCGTAG

Upstream 100 bases:

>100_bases
GCCGAGGCGATGACGGGCGAGATCTTTTTTGTAGCAGGGTTGGTTTTCGTACTGACGCTGGTGGGTATGGCCATCGGTTT
TGGTGTCCTCAAGCTGCGCG

Downstream 100 bases:

>100_bases
GCGCCCGTGGGCGTTTTGCTGAAGTCCGCCCCTGGAACGGATTGCTTGTGTCTTTTGGTCGATGGATTGTCGGGACTGAT
ACGACTACAACAAAAGAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: 2 5' RNA Ligase; 2 5' RNA Ligase Family Protein; 2-5' RNA Ligase

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MRAKKPEMAKAGASGVRGGAGEHDRYFVAVLPPGVIAQEVERIQQIFADHFASCGALRSPPHITLQPPFEWPAAEREWLE
DCLLNFADKQPRFVVALSGFAAFPPRVIYIDVVANAALEALQISLAERFERVLGVVERSRSRRYVPHMTVAFRDLTQENF
ARAWPQFKDRPLSMEFAVHRLTLLMHGGGRWQVCKEFALQP

Sequences:

>Translated_201_residues
MRAKKPEMAKAGASGVRGGAGEHDRYFVAVLPPGVIAQEVERIQQIFADHFASCGALRSPPHITLQPPFEWPAAEREWLE
DCLLNFADKQPRFVVALSGFAAFPPRVIYIDVVANAALEALQISLAERFERVLGVVERSRSRRYVPHMTVAFRDLTQENF
ARAWPQFKDRPLSMEFAVHRLTLLMHGGGRWQVCKEFALQP
>Mature_201_residues
MRAKKPEMAKAGASGVRGGAGEHDRYFVAVLPPGVIAQEVERIQQIFADHFASCGALRSPPHITLQPPFEWPAAEREWLE
DCLLNFADKQPRFVVALSGFAAFPPRVIYIDVVANAALEALQISLAERFERVLGVVERSRSRRYVPHMTVAFRDLTQENF
ARAWPQFKDRPLSMEFAVHRLTLLMHGGGRWQVCKEFALQP

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22695; Mature: 22695

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAKKPEMAKAGASGVRGGAGEHDRYFVAVLPPGVIAQEVERIQQIFADHFASCGALRSP
CCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PHITLQPPFEWPAAEREWLEDCLLNFADKQPRFVVALSGFAAFPPRVIYIDVVANAALEA
CEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHHH
LQISLAERFERVLGVVERSRSRRYVPHMTVAFRDLTQENFARAWPQFKDRPLSMEFAVHR
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHH
LTLLMHGGGRWQVCKEFALQP
HHHHHCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MRAKKPEMAKAGASGVRGGAGEHDRYFVAVLPPGVIAQEVERIQQIFADHFASCGALRSP
CCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PHITLQPPFEWPAAEREWLEDCLLNFADKQPRFVVALSGFAAFPPRVIYIDVVANAALEA
CEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHHH
LQISLAERFERVLGVVERSRSRRYVPHMTVAFRDLTQENFARAWPQFKDRPLSMEFAVHR
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHH
LTLLMHGGGRWQVCKEFALQP
HHHHHCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA