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The map label for this gene is cpcC [H]

Identifier: 37520519

GI number: 37520519

Start: 1007663

End: 1008322

Strand: Direct

Name: cpcC [H]

Synonym: gvip127

Alternate gene names: 37520519

Gene position: 1007663-1008322 (Clockwise)

Preceding gene: 37520514

Following gene: 37520520

Centisome position: 21.63

GC content: 57.12

Gene sequence:

>660_bases
ATGACCAGAATCAAGCGCAACGGCGGCCGGATTCTCGAAATCACCGAAGGCGAAGCTTCCGAAAGCCGCGCAAACTTTCC
GGCGGTCATGGAGCCGCCGGTGGTCGAGCTATATCCCCGGGCCGGCGAAGCGGAGGTGCAGGCGGTGATCGCCGTTGCCT
ACAAACAGGTGTTCGGCAATATCCACGTCATGGAGAGTGAACGGATTGTGTCTGCCGAGTCGCTGTTGCGCAACCGTTCG
ATCAGCGTGCGCGAGTTTGTGCGGCTTCTGGCCAAATCGGACTTGTACAAAGAAAGTTTCTTCCATTGCACCTCCAACAA
TCGCTTCATTGAATTGAATTTCAAACACCTGTTGGGCCGTGCTCCTTACAATCATTCGGAGATTATCGAACATCTCGATC
GCTATCAGTCGCAGGGCTACGACGCGGAGATCGATTCCTATATCGACAGCGACGAGTACGTCAAAACCTTCGGCGAAAAT
GTCGTTCCCTACCACCGCGGATTTAAGTCCCAGGTCGGCCAACAGTCGGTGGCGGCTTTCGAGCGAATGATCCGGCTGTT
CGGCGGCGATGCCAGCAGCGACACCAGCCTGAACCGCACCGGCCAGAAGCGCCTGGTCGATCCCAAGCAATTGCTGCGCT
CCGGCCGCGGCATCGTCTAG

Upstream 100 bases:

>100_bases
ACCGACCCTCGCGCACCATCCCTGGCCCGGTCTCGACACCCACGAACCGAGCCAGAGCAGCTACAGCACGATCGTATCGC
TTGAGCGGCTGTTGCCCGAA

Downstream 100 bases:

>100_bases
GGGTTCTTGCGCTCCCGCCCCTGGGTTTGCGGAAAAGACCGCCGCCGTTCGGTGTACACCGAACGGCGGCACGGCCTGTT
GCTGCCGCTGACGCGCCGAC

Product: phycocyanin-associated rod linker protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTRIKRNGGRILEITEGEASESRANFPAVMEPPVVELYPRAGEAEVQAVIAVAYKQVFGNIHVMESERIVSAESLLRNRS
ISVREFVRLLAKSDLYKESFFHCTSNNRFIELNFKHLLGRAPYNHSEIIEHLDRYQSQGYDAEIDSYIDSDEYVKTFGEN
VVPYHRGFKSQVGQQSVAAFERMIRLFGGDASSDTSLNRTGQKRLVDPKQLLRSGRGIV

Sequences:

>Translated_219_residues
MTRIKRNGGRILEITEGEASESRANFPAVMEPPVVELYPRAGEAEVQAVIAVAYKQVFGNIHVMESERIVSAESLLRNRS
ISVREFVRLLAKSDLYKESFFHCTSNNRFIELNFKHLLGRAPYNHSEIIEHLDRYQSQGYDAEIDSYIDSDEYVKTFGEN
VVPYHRGFKSQVGQQSVAAFERMIRLFGGDASSDTSLNRTGQKRLVDPKQLLRSGRGIV
>Mature_218_residues
TRIKRNGGRILEITEGEASESRANFPAVMEPPVVELYPRAGEAEVQAVIAVAYKQVFGNIHVMESERIVSAESLLRNRSI
SVREFVRLLAKSDLYKESFFHCTSNNRFIELNFKHLLGRAPYNHSEIIEHLDRYQSQGYDAEIDSYIDSDEYVKTFGENV
VPYHRGFKSQVGQQSVAAFERMIRLFGGDASSDTSLNRTGQKRLVDPKQLLRSGRGIV

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 24875; Mature: 24744

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIKRNGGRILEITEGEASESRANFPAVMEPPVVELYPRAGEAEVQAVIAVAYKQVFGN
CCCEECCCCEEEEEECCCCCHHCCCCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHHCC
IHVMESERIVSAESLLRNRSISVREFVRLLAKSDLYKESFFHCTSNNRFIELNFKHLLGR
EEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEHHHHHCC
APYNHSEIIEHLDRYQSQGYDAEIDSYIDSDEYVKTFGENVVPYHRGFKSQVGQQSVAAF
CCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHH
ERMIRLFGGDASSDTSLNRTGQKRLVDPKQLLRSGRGIV
HHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHCCCCCC
>Mature Secondary Structure 
TRIKRNGGRILEITEGEASESRANFPAVMEPPVVELYPRAGEAEVQAVIAVAYKQVFGN
CCEECCCCEEEEEECCCCCHHCCCCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHHCC
IHVMESERIVSAESLLRNRSISVREFVRLLAKSDLYKESFFHCTSNNRFIELNFKHLLGR
EEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEHHHHHCC
APYNHSEIIEHLDRYQSQGYDAEIDSYIDSDEYVKTFGENVVPYHRGFKSQVGQQSVAAF
CCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHH
ERMIRLFGGDASSDTSLNRTGQKRLVDPKQLLRSGRGIV
HHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3109890; 11237320; 11759840; 1743523 [H]