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The map label for this gene is opuBB [H]

Identifier: 37520459

GI number: 37520459

Start: 941659

End: 943149

Strand: Direct

Name: opuBB [H]

Synonym: glr0890

Alternate gene names: 37520459

Gene position: 941659-943149 (Clockwise)

Preceding gene: 37520458

Following gene: 37520461

Centisome position: 20.21

GC content: 62.37

Gene sequence:

>1491_bases
ATGCAATATCTGTGGTTGGTGGTCTTTGTGCTGTGTACAGCCTGGGCGGCTGGGGCTGAGGAACGGCTGGTAGTAGGCTC
CAAGCGGTTTACCGAGTCCTACATTTTGGGAGAACTGGTGCGCCAGACGGCCGAGCGGGCGGGCGAAGCGCAGGTCACCC
ATCGCCAGGGGCTGGGCAACACGGGCATCTTGTTCGCGGCCCTGACCAGCGGTGAAATCGATCTTTACCCGGAGTACACC
GGCACCATCGACAAAGAAGTGCTCAAAAACCGCACCCCGGCGGATCTGATGACCTTGCAAAAGCAACTGGCTCCTTTAGG
GCTGGGAGTGGGGGTGCCCCTCGGCTTCAACGACACCTACGCGCTCGCCATGGGCGCAGATCAGGCCGAAAAACTGGGTA
TCCGCACCCTCTCGGATTTGAAGCGGCACCCCGAACTGCGCTACGGGCTGTCGCAGGAATTTCTCAACCGCGCCGACGGC
TGGCCCGGGGTGCGGCGCGTCTACGGGCTTGCCGCCCAACCGCGCGCCCTGGAGCACGGGCTTGCCTACGAAGCGATTGC
GGCCGGACAAATTGACCTGATTGACATCTACTCGACCGACGCCAAGATCGACCGCTACCGGTTGCGGGTGCTCACCGACG
ATAAGCGGTTTTTCCCGGCCTACGACGCGGTGCTGCTCTACCGGCTGGACTTGCCGAAACGATTGCCCAAGACCTGGGCG
GCGATTGGTCAATTGGAAGGCAAGCTCGATGAGAAGCAGATGGTGCAACTGAACGCCGATGCGGAGTTGCGCGGGCTTAC
TTTTGCCGAGATTGCCGGGCGGTTTTTGCGCGGCGAGACCGACCAGGCCACCACCCGAAGCGGATTTATCGATCAGTTAT
TTGGCGCAGACTTCGGGCGGCTCACCTTCGAACACTTGCTACTCGTTTTCGCTTCGCTGCTTGTCGGTGTAGCCGTCGGG
GTGCCCCTGGGAATTTGGGCGGCAGCGAAACCGGCGCTTTCCCAGGTGATTCTCTCGGGCGTAGGCATCATCCAGACGAT
TCCCTCGCTGGCGCTTCTGGCCTTTCTCATCCCCGTCCTGCAGCAGATCGGCACCGTCCCGGCTTTGGTGGCGTTGTTTC
TCTATTCGCTGTTGCCCATCGTGCGCAACACGTATACCGGTTTGATGGATATCCCCCCCGGCCTGCGCGAATCGGGGCTT
GCCCTTGGTCTGCCGGCAGGAGCCAGGTTGCGGCTGATCGAATTGCCCCTCGCTTCGCGCACGATCCTGGCCGGGATCAA
AACCGCCGCCGTCATCAACGTCGGCACTGCCACGATCGCCGCCTTTATCGGCGCGGGCGGCTTCGGCGAGCGCATCGCCA
CAGGGCTTGCCCTCAACGACAACGCCACCCTGCTCGCAGGCGCCATCCCGGCGGCGGGACTGGCACTACTCGTACAGTTC
GCCTTCGATCTGCTCGAACGCTGGGTCGTACCCAGCGGCTTGCGTTCTTGA

Upstream 100 bases:

>100_bases
CAGCGGTCATCACGCCCAGATCGCCCACTGGCGGCGCGAGCAGCAACTGACGCGCACTCGGGAGCGGCGGCCGGACTTGC
TGCCGCCGGAAGCGTGACCC

Downstream 100 bases:

>100_bases
AACTCAGTCTTCACATAGTCGGGCTGCGATGGGTATGCTAACTTAAAATTGAGAATTCACTGCTTATTACTTGCCAAAGG
TGCTCCAGGATAAGGATTTT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MQYLWLVVFVLCTAWAAGAEERLVVGSKRFTESYILGELVRQTAERAGEAQVTHRQGLGNTGILFAALTSGEIDLYPEYT
GTIDKEVLKNRTPADLMTLQKQLAPLGLGVGVPLGFNDTYALAMGADQAEKLGIRTLSDLKRHPELRYGLSQEFLNRADG
WPGVRRVYGLAAQPRALEHGLAYEAIAAGQIDLIDIYSTDAKIDRYRLRVLTDDKRFFPAYDAVLLYRLDLPKRLPKTWA
AIGQLEGKLDEKQMVQLNADAELRGLTFAEIAGRFLRGETDQATTRSGFIDQLFGADFGRLTFEHLLLVFASLLVGVAVG
VPLGIWAAAKPALSQVILSGVGIIQTIPSLALLAFLIPVLQQIGTVPALVALFLYSLLPIVRNTYTGLMDIPPGLRESGL
ALGLPAGARLRLIELPLASRTILAGIKTAAVINVGTATIAAFIGAGGFGERIATGLALNDNATLLAGAIPAAGLALLVQF
AFDLLERWVVPSGLRS

Sequences:

>Translated_496_residues
MQYLWLVVFVLCTAWAAGAEERLVVGSKRFTESYILGELVRQTAERAGEAQVTHRQGLGNTGILFAALTSGEIDLYPEYT
GTIDKEVLKNRTPADLMTLQKQLAPLGLGVGVPLGFNDTYALAMGADQAEKLGIRTLSDLKRHPELRYGLSQEFLNRADG
WPGVRRVYGLAAQPRALEHGLAYEAIAAGQIDLIDIYSTDAKIDRYRLRVLTDDKRFFPAYDAVLLYRLDLPKRLPKTWA
AIGQLEGKLDEKQMVQLNADAELRGLTFAEIAGRFLRGETDQATTRSGFIDQLFGADFGRLTFEHLLLVFASLLVGVAVG
VPLGIWAAAKPALSQVILSGVGIIQTIPSLALLAFLIPVLQQIGTVPALVALFLYSLLPIVRNTYTGLMDIPPGLRESGL
ALGLPAGARLRLIELPLASRTILAGIKTAAVINVGTATIAAFIGAGGFGERIATGLALNDNATLLAGAIPAAGLALLVQF
AFDLLERWVVPSGLRS
>Mature_496_residues
MQYLWLVVFVLCTAWAAGAEERLVVGSKRFTESYILGELVRQTAERAGEAQVTHRQGLGNTGILFAALTSGEIDLYPEYT
GTIDKEVLKNRTPADLMTLQKQLAPLGLGVGVPLGFNDTYALAMGADQAEKLGIRTLSDLKRHPELRYGLSQEFLNRADG
WPGVRRVYGLAAQPRALEHGLAYEAIAAGQIDLIDIYSTDAKIDRYRLRVLTDDKRFFPAYDAVLLYRLDLPKRLPKTWA
AIGQLEGKLDEKQMVQLNADAELRGLTFAEIAGRFLRGETDQATTRSGFIDQLFGADFGRLTFEHLLLVFASLLVGVAVG
VPLGIWAAAKPALSQVILSGVGIIQTIPSLALLAFLIPVLQQIGTVPALVALFLYSLLPIVRNTYTGLMDIPPGLRESGL
ALGLPAGARLRLIELPLASRTILAGIKTAAVINVGTATIAAFIGAGGFGERIATGLALNDNATLLAGAIPAAGLALLVQF
AFDLLERWVVPSGLRS

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=197, Percent_Identity=40.1015228426396, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI1788449, Length=194, Percent_Identity=38.1443298969072, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1789033, Length=164, Percent_Identity=29.8780487804878, Blast_Score=76, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 53398; Mature: 53398

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYLWLVVFVLCTAWAAGAEERLVVGSKRFTESYILGELVRQTAERAGEAQVTHRQGLGN
CHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC
TGILFAALTSGEIDLYPEYTGTIDKEVLKNRTPADLMTLQKQLAPLGLGVGVPLGFNDTY
CCEEEEEEECCCEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCE
ALAMGADQAEKLGIRTLSDLKRHPELRYGLSQEFLNRADGWPGVRRVYGLAAQPRALEHG
EEEECCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCHHHHHHHCCCCCHHHHHC
LAYEAIAAGQIDLIDIYSTDAKIDRYRLRVLTDDKRFFPAYDAVLLYRLDLPKRLPKTWA
CHHHHHHCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHEEECCCHHHHHHHH
AIGQLEGKLDEKQMVQLNADAELRGLTFAEIAGRFLRGETDQATTRSGFIDQLFGADFGR
HHHHHHCCCCCHHHEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHH
LTFEHLLLVFASLLVGVAVGVPLGIWAAAKPALSQVILSGVGIIQTIPSLALLAFLIPVL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
QQIGTVPALVALFLYSLLPIVRNTYTGLMDIPPGLRESGLALGLPAGARLRLIELPLASR
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCHH
TILAGIKTAAVINVGTATIAAFIGAGGFGERIATGLALNDNATLLAGAIPAAGLALLVQF
HHHHHHHHHHEEECHHHHHHHHHCCCCCHHHHHHCEEECCCCEEEECCCHHHHHHHHHHH
AFDLLERWVVPSGLRS
HHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQYLWLVVFVLCTAWAAGAEERLVVGSKRFTESYILGELVRQTAERAGEAQVTHRQGLGN
CHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCC
TGILFAALTSGEIDLYPEYTGTIDKEVLKNRTPADLMTLQKQLAPLGLGVGVPLGFNDTY
CCEEEEEEECCCEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCE
ALAMGADQAEKLGIRTLSDLKRHPELRYGLSQEFLNRADGWPGVRRVYGLAAQPRALEHG
EEEECCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCHHHHHHHCCCCCHHHHHC
LAYEAIAAGQIDLIDIYSTDAKIDRYRLRVLTDDKRFFPAYDAVLLYRLDLPKRLPKTWA
CHHHHHHCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHEEECCCHHHHHHHH
AIGQLEGKLDEKQMVQLNADAELRGLTFAEIAGRFLRGETDQATTRSGFIDQLFGADFGR
HHHHHHCCCCCHHHEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHH
LTFEHLLLVFASLLVGVAVGVPLGIWAAAKPALSQVILSGVGIIQTIPSLALLAFLIPVL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
QQIGTVPALVALFLYSLLPIVRNTYTGLMDIPPGLRESGLALGLPAGARLRLIELPLASR
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCHH
TILAGIKTAAVINVGTATIAAFIGAGGFGERIATGLALNDNATLLAGAIPAAGLALLVQF
HHHHHHHHHHEEECHHHHHHHHHCCCCCHHHHHHCEEECCCCEEEECCCHHHHHHHHHHH
AFDLLERWVVPSGLRS
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]