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The map label for this gene is rbsB [H]

Identifier: 37520376

GI number: 37520376

Start: 860764

End: 861717

Strand: Direct

Name: rbsB [H]

Synonym: glr0807

Alternate gene names: 37520376

Gene position: 860764-861717 (Clockwise)

Preceding gene: 37520375

Following gene: 37520377

Centisome position: 18.48

GC content: 66.67

Gene sequence:

>954_bases
GTGCGGGATGGGTCCGGGGTGCGAAGGTTCTGGTGGTTGGCGGCGCTGTGTGCACTGGTGCTCGGGGCCTGTGCCCAGAA
CGGGTCGGAGGGTGGCAATCGGCCGGTGGTGGGGGTGTCGCTGCTCACCCGTCAGGACGCCTTCTACCGCGAACTGGAGC
GTGGTCTCAAAGAAGAAGCGGCCAAGCAGAAGCTCACTGTGCGACTCGATGCGGGCGAATTCGATCTGGCCCGCCAGCAG
GGACAGCTCGAAAATTACACCGTCCAGAAAGTGGCGGCAATCGTGGTTTGCCCGACCGATTCCCAGGGGATCGGCCCTGC
CATCGCCCGCGCCAATCAGGCCGATATCCCGGTCTTCACCGCCGACATCCGCGCCAAAGAAGGCGCAGTTGTCTCCCACA
TCGCCTCGGACAACGTCGCAGGCGGGCGGCTCGCGGGCGAGTACGCCGCCAAGCGCCTGAACGGCCGGGGCCAGGTGGCA
ATTATCGATCAGCCCTACATCCAGTCGGTGATCGAGCGGGTGCGCGGTTTCGAGGAAGCCCTCAAGCCCTACCCCAATAT
CCGGGTGGTGGCCCGCCTCACCGGCGACGGCGTGCGCGACCGCTCCTTAAAAGCCGCCGAAGATCTGCTCCAGTCCCAGC
GCAAGCTCGACGCCGTCTTCGCCGTCAACGACGAATCGGCCTTCGGCGTCGTCTCGGCCATCGAGGCCGCCGGGCGCAAA
GGCATCTTCGTCATGGGCTACGACGCCTCCGAAGAAGCGCGCAAGCTCATCGCCGGGGGCAAGTCGCCCCTGCAGGCCGA
TATCGCCCAGGATCCGTACCGCATTGGCCAGGAGACGATCCGGGCGGTGGCTACCCACCTCGCGGGCCAACCGGTGGAAC
CGGTGATCCCCGTGCCCGTGCGCCTGGTGGACAAAGCCGCCCTGGGCAACGAAACCCTTACCCCCGCCCCCTGA

Upstream 100 bases:

>100_bases
ATCGAGACGGCCCAGGCGGTGCAAACCCCGGCCCAACAGTAGGCGGCAACAATAATTCGCCCCGGACCGGGCGGCTTGCT
GGTACATTTGACCTGAAATT

Downstream 100 bases:

>100_bases
GACCGATGCCTCTCCTTGCTCTCGAAAAGATCACCCGCCGCTTCGGGCCGGTCACGGTGCTCGACGGGGTGGATTTCACC
GTCGAGGCGGGGGAGGTGCA

Product: periplasmic sugar binding protein of ABC transport system

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRDGSGVRRFWWLAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAGEFDLARQQ
GQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAKEGAVVSHIASDNVAGGRLAGEYAAKRLNGRGQVA
IIDQPYIQSVIERVRGFEEALKPYPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEAAGRK
GIFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQPVEPVIPVPVRLVDKAALGNETLTPAP

Sequences:

>Translated_317_residues
MRDGSGVRRFWWLAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAGEFDLARQQ
GQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAKEGAVVSHIASDNVAGGRLAGEYAAKRLNGRGQVA
IIDQPYIQSVIERVRGFEEALKPYPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEAAGRK
GIFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQPVEPVIPVPVRLVDKAALGNETLTPAP
>Mature_317_residues
MRDGSGVRRFWWLAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAGEFDLARQQ
GQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAKEGAVVSHIASDNVAGGRLAGEYAAKRLNGRGQVA
IIDQPYIQSVIERVRGFEEALKPYPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEAAGRK
GIFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQPVEPVIPVPVRLVDKAALGNETLTPAP

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=274, Percent_Identity=34.3065693430657, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1790526, Length=307, Percent_Identity=27.3615635179153, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790674, Length=192, Percent_Identity=29.1666666666667, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33904; Mature: 33904

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDGSGVRRFWWLAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
AKQKLTVRLDAGEFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFT
HHCEEEEEECCCCHHHHHHCCCCHHHHHEEEEEEEEECCCCCCCCHHHHCCCCCCCCEEE
ADIRAKEGAVVSHIASDNVAGGRLAGEYAAKRLNGRGQVAIIDQPYIQSVIERVRGFEEA
ECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHH
LKPYPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEAAGRK
HCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHCCCC
GIFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQPVEPVIPVPV
CEEEEECCCCHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
RLVDKAALGNETLTPAP
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRDGSGVRRFWWLAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
AKQKLTVRLDAGEFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFT
HHCEEEEEECCCCHHHHHHCCCCHHHHHEEEEEEEEECCCCCCCCHHHHCCCCCCCCEEE
ADIRAKEGAVVSHIASDNVAGGRLAGEYAAKRLNGRGQVAIIDQPYIQSVIERVRGFEEA
ECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHH
LKPYPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLDAVFAVNDESAFGVVSAIEAAGRK
HCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHHCCCC
GIFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQPVEPVIPVPV
CEEEEECCCCHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
RLVDKAALGNETLTPAP
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]