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The map label for this gene is 37520238

Identifier: 37520238

GI number: 37520238

Start: 717595

End: 718497

Strand: Reverse

Name: 37520238

Synonym: gll0669

Alternate gene names: NA

Gene position: 718497-717595 (Counterclockwise)

Preceding gene: 37520239

Following gene: 37520233

Centisome position: 15.42

GC content: 64.78

Gene sequence:

>903_bases
ATGGCCGCACAAAGGACAGCCATGGATGATCTGGAGACTTTCCAGCAGCATCGGGGAATGCTGTTCGCAATCGCCTACCG
GATGCTCGGCACCGTCGCGGACGCCGAGGACATGGTGCAGGAGACATTCTTGCGCTGGCAGCAAGCATCCGCAGCAGGGG
TGCAATCGCAAAAGTCTTACCTGGCCGCCGTCGTCACTCGCCTCAGTATCGACCACCTGCGCTCCGCCCGCGTTCGGCGC
GAGCAGTATGTGGGACCGTGGCTGCCGGAACCGCTCGCGCAGACGGCCGCCGATCCGCTTCAGCAAAGCGAACTGGCCGA
TTCGCTGTCGATGGCGTTTCTGGTGCTGCTCGAAAGCCTTTCGCCGCTGGAGCGGGCGGTGTTCTTGCTCAGCGAGGTCT
TCGAGTACGACCACGCTGAGATTGCCCGGATCGTGGATAAAAGCCCGGCCAACTGCCGCCAGATCCTCAGACGTGCCCGA
CGGCATCTGGCCGAGCGGCAGCCGCGCTTTCGATCGTCGCGCCCGCACAGCGAAAAGCTGGTGGCCCGGTTCCTCCAGGC
CTGCTCCGGCGGGGATCTTGAAGGGCTGCTCGCGGTACTCGCCCCGGAGGTTACCCTGGTCGGGGATGGCGGCGGCAAAG
TGGCAGCCACGATCCGGCCCCTGCAGGGAGCTGCCCGGGTGGCGCGGTTCTTCGTGGCCCTCAGGCGGCGGGTGGGCCAC
TTCACGCTCATGCCGACGGTGATCAACGGCCAGTCGGGGATCGCCTTTCTTGTCGCCGGAAATCTGCAGAGCGCCATGAC
TTTCGACATCACCGAAGCGGGTATCCAGACCATCTACAGCGTCCGCAATCCCGAGAAGCTGCAGCGGTTTGCCCAATCGC
TGGGCATGCCGCTACCTCCCTGA

Upstream 100 bases:

>100_bases
CGGCTGGCCGTTGCCACGGGCCTGGTTGCGGGCACCCAGGAGCAACACTTTCGCCAACTGCGACAAAGGGGCATCCTGGC
GGGTGAGGCGGTGAAGTAGC

Downstream 100 bases:

>100_bases
GGTCGCGCCGCGAGATCGACAAACTCCGCCCGCACCGATCCTGCGGCGATCTGCAGCCTGGCCACAGTCGTTACCCATCG
ACTACCTCAGCGAATATCGG

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor; ECF-Sigma Factor; RNA Polymerase Sigma-70 Factor; Sigma-70 Region 2 Domain-Containing Protein; ECF Family RNA Polymerase Sigma Factor; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase; RNA Polymerase ECF-Type Sigma Factor; ECF Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-70 Family RNA Polymerase Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor Protein; ECF-Family Protein RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-70-Like Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; ECF Subfamily RNA Polymerase Sigma-; RNA Polymerase Sigma-70 Factor Protein; Sigma-70 Factor

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MAAQRTAMDDLETFQQHRGMLFAIAYRMLGTVADAEDMVQETFLRWQQASAAGVQSQKSYLAAVVTRLSIDHLRSARVRR
EQYVGPWLPEPLAQTAADPLQQSELADSLSMAFLVLLESLSPLERAVFLLSEVFEYDHAEIARIVDKSPANCRQILRRAR
RHLAERQPRFRSSRPHSEKLVARFLQACSGGDLEGLLAVLAPEVTLVGDGGGKVAATIRPLQGAARVARFFVALRRRVGH
FTLMPTVINGQSGIAFLVAGNLQSAMTFDITEAGIQTIYSVRNPEKLQRFAQSLGMPLPP

Sequences:

>Translated_300_residues
MAAQRTAMDDLETFQQHRGMLFAIAYRMLGTVADAEDMVQETFLRWQQASAAGVQSQKSYLAAVVTRLSIDHLRSARVRR
EQYVGPWLPEPLAQTAADPLQQSELADSLSMAFLVLLESLSPLERAVFLLSEVFEYDHAEIARIVDKSPANCRQILRRAR
RHLAERQPRFRSSRPHSEKLVARFLQACSGGDLEGLLAVLAPEVTLVGDGGGKVAATIRPLQGAARVARFFVALRRRVGH
FTLMPTVINGQSGIAFLVAGNLQSAMTFDITEAGIQTIYSVRNPEKLQRFAQSLGMPLPP
>Mature_299_residues
AAQRTAMDDLETFQQHRGMLFAIAYRMLGTVADAEDMVQETFLRWQQASAAGVQSQKSYLAAVVTRLSIDHLRSARVRRE
QYVGPWLPEPLAQTAADPLQQSELADSLSMAFLVLLESLSPLERAVFLLSEVFEYDHAEIARIVDKSPANCRQILRRARR
HLAERQPRFRSSRPHSEKLVARFLQACSGGDLEGLLAVLAPEVTLVGDGGGKVAATIRPLQGAARVARFFVALRRRVGHF
TLMPTVINGQSGIAFLVAGNLQSAMTFDITEAGIQTIYSVRNPEKLQRFAQSLGMPLPP

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33182; Mature: 33051

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQRTAMDDLETFQQHRGMLFAIAYRMLGTVADAEDMVQETFLRWQQASAAGVQSQKSY
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAVVTRLSIDHLRSARVRREQYVGPWLPEPLAQTAADPLQQSELADSLSMAFLVLLESL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SPLERAVFLLSEVFEYDHAEIARIVDKSPANCRQILRRARRHLAERQPRFRSSRPHSEKL
CHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
VARFLQACSGGDLEGLLAVLAPEVTLVGDGGGKVAATIRPLQGAARVARFFVALRRRVGH
HHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
FTLMPTVINGQSGIAFLVAGNLQSAMTFDITEAGIQTIYSVRNPEKLQRFAQSLGMPLPP
EEEECEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AAQRTAMDDLETFQQHRGMLFAIAYRMLGTVADAEDMVQETFLRWQQASAAGVQSQKSY
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAVVTRLSIDHLRSARVRREQYVGPWLPEPLAQTAADPLQQSELADSLSMAFLVLLESL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SPLERAVFLLSEVFEYDHAEIARIVDKSPANCRQILRRARRHLAERQPRFRSSRPHSEKL
CHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
VARFLQACSGGDLEGLLAVLAPEVTLVGDGGGKVAATIRPLQGAARVARFFVALRRRVGH
HHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCC
FTLMPTVINGQSGIAFLVAGNLQSAMTFDITEAGIQTIYSVRNPEKLQRFAQSLGMPLPP
EEEECEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA