Click here to switch to the map view.

The map label for this gene is yciC [H]

Identifier: 37520103

GI number: 37520103

Start: 570945

End: 572294

Strand: Direct

Name: yciC [H]

Synonym: glr0534

Alternate gene names: 37520103

Gene position: 570945-572294 (Clockwise)

Preceding gene: 37520102

Following gene: 37520104

Centisome position: 12.25

GC content: 62.15

Gene sequence:

>1350_bases
ATGGAAAGTAACCGTGTACCGGTGACAGTTCTGACCGGTTTTTTGGGTTCGGGGAAGACGACGCTCTTGAACCGCATCCT
CACCGAGGAGCACGGCAAGCGCATCGCCGTCATCGAGAACGAGTTCGGCGAAATCGGCATCGACCAGGCCCTGGTCGTCA
ACGCCGAAGAAGAAATCTTCGAGATGAACAACGGTTGCATCTGCTGCACCGTCCGCGGCGACCTCATCCGGATCATCGGC
AGCCTGATGCGCCGCAAGGACAAGTTCGACCACATCCTGGTCGAGACCACGGGGCTCGCGGACCCCTCGCCCGTGGCCCA
AACGTTCTTCGTCGACGACGAGATGCGCAGTCAACTCAAGCTCGACGGCATCGTGACGGTGGTGGATGCCCGGCACATCT
GGCAGCACATCGACCAGAGCGATCAGTGCAAGGAGCAGATTGCCTTCGCCGACGTCATCCTGCTCAACAAAACCGACCTC
GTCACCCCCGAAGAGCTGGACACCCTGGAGCAACGGGTACGCTCGATGAACGCCCTGGCGCGTGTCCATCGCACCCAAAA
TGCAGCGGTGGAGATGGACCGGGTGCTTGAGATCGGCGGATTTGATCTGGAGCGGGCGCTCGCGGTCAAGCCGACTTTTC
TGGAACCGGAATACCCCTTCGAGTGGGGTGGGATCTACGAACTGGCGGCCGGAACCTACACGCTTGCCCTGCAGGATGGT
CCTGATTCGAGCATGACGCTTGCCCTCTTCGCGGCCGAAGGTACCGACGAGGCCGCCCTGGAAGCTGCCCAGCAAGAGGC
GGTGCCCCTCTTCTCGCAGCAGGCACCGCCGGTCCATCCCAAAGGCGCGCTGGTGCCCCAGGCAGCACCCGTCGCCCTCA
ACCTGGCGAAGGCGGGCGCGAAAGACTTTTTCCTTGAAATCCAGATGGCGGGGACCTACTCCCTTTTCACCCAGCACCGC
CCGGAAGAATTCGACCTGACGGTGCACGCCGCCGACGGTGCCACCCGTACACCCCGAATCGGACGGACTTTCGAGGCGGG
GCACACCCACGACGAGGAGGTGACCTCGGTGGGTATCGAAGTGCAAGGGGCGGTCGACCCAAAGAAGTTGAGCGCCTGGC
TGAGCGTTCTGTTGCGCGAACAGGGGGTCGATATCTTTCGGACAAAGGGCATTCTCCACCTGCAGGGCGACAACCGCCGC
TATGTGTTTCAGGGCGTGCACATGCTCTTCGATAGCAGCGCCGATCGGCCCTGGGGCAGCGACGAACCCCGCACCAATCA
ACTGGTCTTCATCGGCCGCAACCTCGATCGCAACCGGCTGGTGCGGGAGTTCAAAGCGTGTCTGGTCTGA

Upstream 100 bases:

>100_bases
CAGGGGGTGGGCTGTTTGCTTTGCTCGTGGCGCTCAGGCTCTGGAGTGTCGAAAAGCCCGCGCTCGATGAATCGAAATGA
CTTCTAGGAGACAGTGACCA

Downstream 100 bases:

>100_bases
AGCGCTCCAGAAACTCGCACACCCTGGCGGAGCGCTGGCGCACGGGTCTGGAAGACTACGTCACCGCCACGGCCTGGTCC
GCGGATGGCACGTTGCTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MESNRVPVTVLTGFLGSGKTTLLNRILTEEHGKRIAVIENEFGEIGIDQALVVNAEEEIFEMNNGCICCTVRGDLIRIIG
SLMRRKDKFDHILVETTGLADPSPVAQTFFVDDEMRSQLKLDGIVTVVDARHIWQHIDQSDQCKEQIAFADVILLNKTDL
VTPEELDTLEQRVRSMNALARVHRTQNAAVEMDRVLEIGGFDLERALAVKPTFLEPEYPFEWGGIYELAAGTYTLALQDG
PDSSMTLALFAAEGTDEAALEAAQQEAVPLFSQQAPPVHPKGALVPQAAPVALNLAKAGAKDFFLEIQMAGTYSLFTQHR
PEEFDLTVHAADGATRTPRIGRTFEAGHTHDEEVTSVGIEVQGAVDPKKLSAWLSVLLREQGVDIFRTKGILHLQGDNRR
YVFQGVHMLFDSSADRPWGSDEPRTNQLVFIGRNLDRNRLVREFKACLV

Sequences:

>Translated_449_residues
MESNRVPVTVLTGFLGSGKTTLLNRILTEEHGKRIAVIENEFGEIGIDQALVVNAEEEIFEMNNGCICCTVRGDLIRIIG
SLMRRKDKFDHILVETTGLADPSPVAQTFFVDDEMRSQLKLDGIVTVVDARHIWQHIDQSDQCKEQIAFADVILLNKTDL
VTPEELDTLEQRVRSMNALARVHRTQNAAVEMDRVLEIGGFDLERALAVKPTFLEPEYPFEWGGIYELAAGTYTLALQDG
PDSSMTLALFAAEGTDEAALEAAQQEAVPLFSQQAPPVHPKGALVPQAAPVALNLAKAGAKDFFLEIQMAGTYSLFTQHR
PEEFDLTVHAADGATRTPRIGRTFEAGHTHDEEVTSVGIEVQGAVDPKKLSAWLSVLLREQGVDIFRTKGILHLQGDNRR
YVFQGVHMLFDSSADRPWGSDEPRTNQLVFIGRNLDRNRLVREFKACLV
>Mature_449_residues
MESNRVPVTVLTGFLGSGKTTLLNRILTEEHGKRIAVIENEFGEIGIDQALVVNAEEEIFEMNNGCICCTVRGDLIRIIG
SLMRRKDKFDHILVETTGLADPSPVAQTFFVDDEMRSQLKLDGIVTVVDARHIWQHIDQSDQCKEQIAFADVILLNKTDL
VTPEELDTLEQRVRSMNALARVHRTQNAAVEMDRVLEIGGFDLERALAVKPTFLEPEYPFEWGGIYELAAGTYTLALQDG
PDSSMTLALFAAEGTDEAALEAAQQEAVPLFSQQAPPVHPKGALVPQAAPVALNLAKAGAKDFFLEIQMAGTYSLFTQHR
PEEFDLTVHAADGATRTPRIGRTFEAGHTHDEEVTSVGIEVQGAVDPKKLSAWLSVLLREQGVDIFRTKGILHLQGDNRR
YVFQGVHMLFDSSADRPWGSDEPRTNQLVFIGRNLDRNRLVREFKACLV

Specific function: May bind GTP. Might act as metal chaperone (Potential). Contributes to optimal growth under starvation for zinc [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI33469141, Length=209, Percent_Identity=46.88995215311, Blast_Score=199, Evalue=5e-51,
Organism=Homo sapiens, GI126722884, Length=209, Percent_Identity=46.88995215311, Blast_Score=199, Evalue=6e-51,
Organism=Homo sapiens, GI148727351, Length=209, Percent_Identity=46.4114832535885, Blast_Score=195, Evalue=7e-50,
Organism=Homo sapiens, GI146231952, Length=209, Percent_Identity=46.4114832535885, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI223941779, Length=198, Percent_Identity=46.969696969697, Blast_Score=189, Evalue=4e-48,
Organism=Homo sapiens, GI223941776, Length=198, Percent_Identity=46.4646464646465, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI119120938, Length=193, Percent_Identity=41.9689119170984, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI310124603, Length=89, Percent_Identity=37.0786516853933, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI87082430, Length=215, Percent_Identity=40.4651162790698, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1788499, Length=166, Percent_Identity=33.1325301204819, Blast_Score=92, Evalue=7e-20,
Organism=Saccharomyces cerevisiae, GI6324356, Length=229, Percent_Identity=35.3711790393013, Blast_Score=148, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 49816; Mature: 49816

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESNRVPVTVLTGFLGSGKTTLLNRILTEEHGKRIAVIENEFGEIGIDQALVVNAEEEIF
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCHHHHH
EMNNGCICCTVRGDLIRIIGSLMRRKDKFDHILVETTGLADPSPVAQTFFVDDEMRSQLK
CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHEE
LDGIVTVVDARHIWQHIDQSDQCKEQIAFADVILLNKTDLVTPEELDTLEQRVRSMNALA
CCCEEEEEHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
RVHRTQNAAVEMDRVLEIGGFDLERALAVKPTFLEPEYPFEWGGIYELAAGTYTLALQDG
HHHHHCCHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCCCCCCEEEECCCEEEEEEECC
PDSSMTLALFAAEGTDEAALEAAQQEAVPLFSQQAPPVHPKGALVPQAAPVALNLAKAGA
CCCCEEEEEEEECCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCEEEHHHCCC
KDFFLEIQMAGTYSLFTQHRPEEFDLTVHAADGATRTPRIGRTFEAGHTHDEEVTSVGIE
CEEEEEEEECCCEEHHHCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCHHHEECEE
VQGAVDPKKLSAWLSVLLREQGVDIFRTKGILHLQGDNRRYVFQGVHMLFDSSADRPWGS
EECCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCEEEEEHHHHHHCCCCCCCCCC
DEPRTNQLVFIGRNLDRNRLVREFKACLV
CCCCCCEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MESNRVPVTVLTGFLGSGKTTLLNRILTEEHGKRIAVIENEFGEIGIDQALVVNAEEEIF
CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCHHHHH
EMNNGCICCTVRGDLIRIIGSLMRRKDKFDHILVETTGLADPSPVAQTFFVDDEMRSQLK
CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHEE
LDGIVTVVDARHIWQHIDQSDQCKEQIAFADVILLNKTDLVTPEELDTLEQRVRSMNALA
CCCEEEEEHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
RVHRTQNAAVEMDRVLEIGGFDLERALAVKPTFLEPEYPFEWGGIYELAAGTYTLALQDG
HHHHHCCHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCCCCCCEEEECCCEEEEEEECC
PDSSMTLALFAAEGTDEAALEAAQQEAVPLFSQQAPPVHPKGALVPQAAPVALNLAKAGA
CCCCEEEEEEEECCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCEEEHHHCCC
KDFFLEIQMAGTYSLFTQHRPEEFDLTVHAADGATRTPRIGRTFEAGHTHDEEVTSVGIE
CEEEEEEEECCCEEHHHCCCCCCEEEEEEECCCCCCCCCCCCEECCCCCCCCHHHEECEE
VQGAVDPKKLSAWLSVLLREQGVDIFRTKGILHLQGDNRRYVFQGVHMLFDSSADRPWGS
EECCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCEEEEEHHHHHHCCCCCCCCCC
DEPRTNQLVFIGRNLDRNRLVREFKACLV
CCCCCCEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 9811636 [H]