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The map label for this gene is cpcT1

Identifier: 37520007

GI number: 37520007

Start: 468631

End: 469320

Strand: Direct

Name: cpcT1

Synonym: glr0438

Alternate gene names: 37520007

Gene position: 468631-469320 (Clockwise)

Preceding gene: 37520006

Following gene: 37520008

Centisome position: 10.06

GC content: 61.45

Gene sequence:

>690_bases
GTGTTATCCTCAGGCCAATCCGAGAGCTTGAATCAGCCCATGCGCATGGTCATTTGCTGTTTGCTGCTCAGCACCGGTTT
GCTTGCGGCAGTACCCTCCCCGGCTGAGCAAAATGCGCTTCCAGCTACCGAGCGGCAGGTGGAAGAGGTGGTCACGCGCC
TGACGGGGATCATGACGACCACCCAGCAAGCACAAAGCGATGCCGCCCGGCCCGATGTGCGGATGACCACCTGCTCTGTG
CAGCTTGAAGGCGACAAGTCAAAAGCTATCTATCTTTACCAGGAACAGACGATGTCGAACAATCTGGGTGCGCCTTACCG
GCAGCGCCTGTTGCGCATCGCCGCGAGCGCCGACGGCCGCGCGGTCGAATCGGCAGGATTCAAATTCGTCGAGGCGAAAC
CTCTGGCGGGACTGTGCGCCAAACCCGCCGCCGAGCGGCTGATCGCACCCATGGCTCTGGACGGCGATCCGACTTGTACT
GTGCGGCTGGTACAGGCGGGCGACAAGTACATGGGCACCACCCCGGAGGGTGGTTGTCAGAGCAACGTGCGTGGGGCGGC
GCGGATCACCAACGAGATCACCTTATATAAAGAAGGTATGGACACCCGGGACCGGGGCTTTGACGCCCAGGGCAACCAGG
TGTGGGGAGCCAAGGAAGAACCGTACCGGTTTCGTCGGTTGACCCCCTGA

Upstream 100 bases:

>100_bases
GCCACACCGGCTGTCCAGGGAGGCTACGCCGCCGCCGCGGCTGTGCTGGTGGCCGTTTGCCACCTCAAGCACCGTTGGGA
TCTGCGCCGAATGTATTGAA

Downstream 100 bases:

>100_bases
GGGCCGGGCGGTACGGGCAGGATCTCTATACTGAAAGTGAGCCCAGGCGAGGAGATGACGATGGCACCCGAGGAAAACCC
GAGCCCCACGGAGAGCACCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MLSSGQSESLNQPMRMVICCLLLSTGLLAAVPSPAEQNALPATERQVEEVVTRLTGIMTTTQQAQSDAARPDVRMTTCSV
QLEGDKSKAIYLYQEQTMSNNLGAPYRQRLLRIAASADGRAVESAGFKFVEAKPLAGLCAKPAAERLIAPMALDGDPTCT
VRLVQAGDKYMGTTPEGGCQSNVRGAARITNEITLYKEGMDTRDRGFDAQGNQVWGAKEEPYRFRRLTP

Sequences:

>Translated_229_residues
MLSSGQSESLNQPMRMVICCLLLSTGLLAAVPSPAEQNALPATERQVEEVVTRLTGIMTTTQQAQSDAARPDVRMTTCSV
QLEGDKSKAIYLYQEQTMSNNLGAPYRQRLLRIAASADGRAVESAGFKFVEAKPLAGLCAKPAAERLIAPMALDGDPTCT
VRLVQAGDKYMGTTPEGGCQSNVRGAARITNEITLYKEGMDTRDRGFDAQGNQVWGAKEEPYRFRRLTP
>Mature_229_residues
MLSSGQSESLNQPMRMVICCLLLSTGLLAAVPSPAEQNALPATERQVEEVVTRLTGIMTTTQQAQSDAARPDVRMTTCSV
QLEGDKSKAIYLYQEQTMSNNLGAPYRQRLLRIAASADGRAVESAGFKFVEAKPLAGLCAKPAAERLIAPMALDGDPTCT
VRLVQAGDKYMGTTPEGGCQSNVRGAARITNEITLYKEGMDTRDRGFDAQGNQVWGAKEEPYRFRRLTP

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcT/CpeT biliprotein lyase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CPXT1_GLOVI (Q7NNH3)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_923384.1
- GeneID:   2599742
- GenomeReviews:   BA000045_GR
- KEGG:   gvi:glr0438
- NMPDR:   fig|251221.1.peg.438
- HOGENOM:   HBG441758
- OMA:   ARITNEI
- ProtClustDB:   CLSK923070
- BioCyc:   GVIO251221:GLR0438-MONOMER
- HAMAP:   MF_01460
- InterPro:   IPR010404

Pfam domain/function: PF06206 DUF1001

EC number: NA

Molecular weight: Translated: 24835; Mature: 24835

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSGQSESLNQPMRMVICCLLLSTGLLAAVPSPAEQNALPATERQVEEVVTRLTGIMTT
CCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TQQAQSDAARPDVRMTTCSVQLEGDKSKAIYLYQEQTMSNNLGAPYRQRLLRIAASADGR
HHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEECCHHCCCCCCHHHHHHHHHHHCCCCC
AVESAGFKFVEAKPLAGLCAKPAAERLIAPMALDGDPTCTVRLVQAGDKYMGTTPEGGCQ
EEHHCCCEEEECCCCHHHHCCHHHHHHHCCEECCCCCCEEEEEEECCCCCCCCCCCCCCC
SNVRGAARITNEITLYKEGMDTRDRGFDAQGNQVWGAKEEPYRFRRLTP
CCCCHHHHHHHHEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSSGQSESLNQPMRMVICCLLLSTGLLAAVPSPAEQNALPATERQVEEVVTRLTGIMTT
CCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TQQAQSDAARPDVRMTTCSVQLEGDKSKAIYLYQEQTMSNNLGAPYRQRLLRIAASADGR
HHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEECCHHCCCCCCHHHHHHHHHHHCCCCC
AVESAGFKFVEAKPLAGLCAKPAAERLIAPMALDGDPTCTVRLVQAGDKYMGTTPEGGCQ
EEHHCCCEEEECCCCHHHHCCHHHHHHHCCEECCCCCCEEEEEEECCCCCCCCCCCCCCC
SNVRGAARITNEITLYKEGMDTRDRGFDAQGNQVWGAKEEPYRFRRLTP
CCCCHHHHHHHHEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292