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The map label for this gene is ycf41 [C]

Identifier: 37520002

GI number: 37520002

Start: 463718

End: 464170

Strand: Reverse

Name: ycf41 [C]

Synonym: gvip045

Alternate gene names: 37520002

Gene position: 464170-463718 (Counterclockwise)

Preceding gene: 37520003

Following gene: 37520000

Centisome position: 9.96

GC content: 68.21

Gene sequence:

>453_bases
ATGAACGCCATTGCTTTGATGGGTACGCTTCAGTCCGAGCCGGAATTGCGCTTCACCCAGGACGGGCTTGCGCGCCTTTC
GACCCTGCTCGGCTTCAGTGCCGGCCGCCCCGAGGAACCGGACTTTCAGATCCGGATGGTCGCCTTCGGCAACCTGGCCG
AAGAAGTCGCCCGCACCCTCCATCACGGCGATGGTGTCCTGGTAGAAGGCCGCCTGCAGGCGGAGACCAGGGGTCGCCCC
GACGGCACCAAAGAAAAAGTCACCGAATTGATTGCCCGCAAGGTCTACCCGGCCACCGTGGGCGAGAGCCTGGCCGGAGC
GACCCCTGCTCCTGCCGCCGCCCCAGCCGCCTCCGCCAAAAACGGTGCTCCCGCCGCCCGCCCGGCGCCCCGTCCGGCGG
CTCCCGCCCGGCCCACGGCTCCCGAGCCCGATCTCGACGATATTCCGTTCTAG

Upstream 100 bases:

>100_bases
ACGACGCCCCGACAACGGCGGTGGCCGAACTGGAGAAGGCCTTCCGGCTCAGCGAAGAGGTGATCCGGTTTTTAACTGTT
CGCGAAGAGGATTAACCGCC

Downstream 100 bases:

>100_bases
CCGGCCGCTTTGCGACTTTGGTAGAAAAACCAGCCCAGCCCCAGCAGCAGCACCAGCGGCACCGGGATAAAAAAGGCCAC
CGACTGGCGCAGCAAGAACA

Product: hypothetical protein

Products: NA

Alternate protein names: Thylakoid-associated SSB [H]

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MNAIALMGTLQSEPELRFTQDGLARLSTLLGFSAGRPEEPDFQIRMVAFGNLAEEVARTLHHGDGVLVEGRLQAETRGRP
DGTKEKVTELIARKVYPATVGESLAGATPAPAAAPAASAKNGAPAARPAPRPAAPARPTAPEPDLDDIPF

Sequences:

>Translated_150_residues
MNAIALMGTLQSEPELRFTQDGLARLSTLLGFSAGRPEEPDFQIRMVAFGNLAEEVARTLHHGDGVLVEGRLQAETRGRP
DGTKEKVTELIARKVYPATVGESLAGATPAPAAAPAASAKNGAPAARPAPRPAAPARPTAPEPDLDDIPF
>Mature_150_residues
MNAIALMGTLQSEPELRFTQDGLARLSTLLGFSAGRPEEPDFQIRMVAFGNLAEEVARTLHHGDGVLVEGRLQAETRGRP
DGTKEKVTELIARKVYPATVGESLAGATPAPAAAPAASAKNGAPAARPAPRPAAPARPTAPEPDLDDIPF

Specific function: This Protein Is Essential For Replication Of The Chromosomes And Its Single-Stranded DNA Phages. It Is Also Involved In DNA Recombination And Repair. [C]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15671; Mature: 15671

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIALMGTLQSEPELRFTQDGLARLSTLLGFSAGRPEEPDFQIRMVAFGNLAEEVARTL
CCCEEEEECCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHH
HHGDGVLVEGRLQAETRGRPDGTKEKVTELIARKVYPATVGESLAGATPAPAAAPAASAK
HCCCCEEEECEECCCCCCCCCCCHHHHHHHHHHHCCCHHHCHHHCCCCCCCCCCCCCCCC
NGAPAARPAPRPAAPARPTAPEPDLDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNAIALMGTLQSEPELRFTQDGLARLSTLLGFSAGRPEEPDFQIRMVAFGNLAEEVARTL
CCCEEEEECCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHH
HHGDGVLVEGRLQAETRGRPDGTKEKVTELIARKVYPATVGESLAGATPAPAAAPAASAK
HCCCCEEEECEECCCCCCCCCCCHHHHHHHHHHHCCCHHHCHHHCCCCCCCCCCCCCCCC
NGAPAARPAPRPAAPARPTAPEPDLDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]