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The map label for this gene is pchR [H]

Identifier: 37519893

GI number: 37519893

Start: 336517

End: 337542

Strand: Reverse

Name: pchR [H]

Synonym: gll0324

Alternate gene names: 37519893

Gene position: 337542-336517 (Counterclockwise)

Preceding gene: 37519900

Following gene: 37519892

Centisome position: 7.24

GC content: 63.55

Gene sequence:

>1026_bases
GTGGCTCCTTGGGGATGGGCGGTGAAGATTACGATTTCGGCGGGCAACTTTGCGCAATTTGTCACTGCTTTTCAGGAGTT
GACCGGTTGCACCGGCCGGTGCAATGGTGCCGAGTTGACGCTCCACTGGCCGCAGCAGGCAGGCGAAGGATACTACCGCT
GGCTTCGGTTGCGCGGCGGCATCGAGCTATTTATCTGCGACTACCAATTGCACCAGTCGGTCACTGTGGACTTGGAGATC
TTGGAGTTTCCCTCGCTGTCGGTGGGTTTTATCGTCTCGGGTCATTTTCGCGGTACCCTGCCCGGTGCCGCCGAGAAGCT
CGAAGGACGCCCGGGGCAGAGCGGTCTGTTTTTGTTGCCCGCTCACCGGGAAATTTCCGAATTGCCGGCGGCCGAGCGGC
TGCGCTTCGTGGGGATGTCCTTCGAGCCGAGTTTGATCGAGTCGGTCTTCGAAGGGCAATCACTGCCGGTGGCCCCGGCG
CTGAGGCCCTGGATGGCGGGGCGGGAGGCGCCGCCGTTTTTTCGTCTGGGAGCGATCACCCCTGCAATGGCCACTGCCCT
CGATCAGGTTTTGCACTGTCCGTTTGAGGGGGCGACCCGGCAGCTGTTTCTCGAAGGCAAGGCACTGGAATTGGTCGCAT
TGCAACTGGAGCAGACCCTGACGGACGGGCCGTCGCCGGCCGCGCGCCATCGGTTGCACGGCGACGACATCGACCGTATC
CACCAGGCGCGCGACATCTTGATTGCCAATCTCGAACATCCGCCTACGTTGATCGCCCTCGCCCACCAGGTCGGCCTCAA
CGACTACAAGCTGAAGCTCGGTTTCCGGCAGGTCTTCGGCACGACGGCGTTCGGCTATCTGCACGCCCACCGCCTGGAGC
AGGCCCGAGTGATGCTGGCGGCCCGGCAGATCAACGTCTCGACCGCCGCCCGCGCCGTGGGCTACACCAACCTCAGCGCC
TTCAGCCTCGCTTTCAAGCGCCGCTTCGGGGTGCTGCCGAGCACCTGGCAGTCGCGCCGCAGTTGA

Upstream 100 bases:

>100_bases
AGCAACAGGCGCTCAGATTTGTCCCCTTGACAGAACAGGGGGCATGAATCTTAATGAAAGTCAATTCAATAGCACACCGG
CTGCACTGGTCTCAGCGGCT

Downstream 100 bases:

>100_bases
AGGCTTCCGAAAGCAAAGCGATCCGTCCGGCGGTAATCATAATCCGTTTGACGGTAGAAGCGGCGAAGCGCGATCGGATA
ACCTCACCCTCAGTAGTTGA

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MAPWGWAVKITISAGNFAQFVTAFQELTGCTGRCNGAELTLHWPQQAGEGYYRWLRLRGGIELFICDYQLHQSVTVDLEI
LEFPSLSVGFIVSGHFRGTLPGAAEKLEGRPGQSGLFLLPAHREISELPAAERLRFVGMSFEPSLIESVFEGQSLPVAPA
LRPWMAGREAPPFFRLGAITPAMATALDQVLHCPFEGATRQLFLEGKALELVALQLEQTLTDGPSPAARHRLHGDDIDRI
HQARDILIANLEHPPTLIALAHQVGLNDYKLKLGFRQVFGTTAFGYLHAHRLEQARVMLAARQINVSTAARAVGYTNLSA
FSLAFKRRFGVLPSTWQSRRS

Sequences:

>Translated_341_residues
MAPWGWAVKITISAGNFAQFVTAFQELTGCTGRCNGAELTLHWPQQAGEGYYRWLRLRGGIELFICDYQLHQSVTVDLEI
LEFPSLSVGFIVSGHFRGTLPGAAEKLEGRPGQSGLFLLPAHREISELPAAERLRFVGMSFEPSLIESVFEGQSLPVAPA
LRPWMAGREAPPFFRLGAITPAMATALDQVLHCPFEGATRQLFLEGKALELVALQLEQTLTDGPSPAARHRLHGDDIDRI
HQARDILIANLEHPPTLIALAHQVGLNDYKLKLGFRQVFGTTAFGYLHAHRLEQARVMLAARQINVSTAARAVGYTNLSA
FSLAFKRRFGVLPSTWQSRRS
>Mature_340_residues
APWGWAVKITISAGNFAQFVTAFQELTGCTGRCNGAELTLHWPQQAGEGYYRWLRLRGGIELFICDYQLHQSVTVDLEIL
EFPSLSVGFIVSGHFRGTLPGAAEKLEGRPGQSGLFLLPAHREISELPAAERLRFVGMSFEPSLIESVFEGQSLPVAPAL
RPWMAGREAPPFFRLGAITPAMATALDQVLHCPFEGATRQLFLEGKALELVALQLEQTLTDGPSPAARHRLHGDDIDRIH
QARDILIANLEHPPTLIALAHQVGLNDYKLKLGFRQVFGTTAFGYLHAHRLEQARVMLAARQINVSTAARAVGYTNLSAF
SLAFKRRFGVLPSTWQSRRS

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37663; Mature: 37532

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPWGWAVKITISAGNFAQFVTAFQELTGCTGRCNGAELTLHWPQQAGEGYYRWLRLRGG
CCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCHHEEEEEECCC
IELFICDYQLHQSVTVDLEILEFPSLSVGFIVSGHFRGTLPGAAEKLEGRPGQSGLFLLP
EEEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEE
AHREISELPAAERLRFVGMSFEPSLIESVFEGQSLPVAPALRPWMAGREAPPFFRLGAIT
CCCHHHHCCHHHHHEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEECCCC
PAMATALDQVLHCPFEGATRQLFLEGKALELVALQLEQTLTDGPSPAARHRLHGDDIDRI
HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHH
HQARDILIANLEHPPTLIALAHQVGLNDYKLKLGFRQVFGTTAFGYLHAHRLEQARVMLA
HHHHHHEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQINVSTAARAVGYTNLSAFSLAFKRRFGVLPSTWQSRRS
HHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure 
APWGWAVKITISAGNFAQFVTAFQELTGCTGRCNGAELTLHWPQQAGEGYYRWLRLRGG
CCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHCCCHHEEEEEECCC
IELFICDYQLHQSVTVDLEILEFPSLSVGFIVSGHFRGTLPGAAEKLEGRPGQSGLFLLP
EEEEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCCEEEEE
AHREISELPAAERLRFVGMSFEPSLIESVFEGQSLPVAPALRPWMAGREAPPFFRLGAIT
CCCHHHHCCHHHHHEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEEECCCC
PAMATALDQVLHCPFEGATRQLFLEGKALELVALQLEQTLTDGPSPAARHRLHGDDIDRI
HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHH
HQARDILIANLEHPPTLIALAHQVGLNDYKLKLGFRQVFGTTAFGYLHAHRLEQARVMLA
HHHHHHEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQINVSTAARAVGYTNLSAFSLAFKRRFGVLPSTWQSRRS
HHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]