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The map label for this gene is 37519829

Identifier: 37519829

GI number: 37519829

Start: 266243

End: 266896

Strand: Reverse

Name: 37519829

Synonym: gll0260

Alternate gene names: NA

Gene position: 266896-266243 (Counterclockwise)

Preceding gene: 37519830

Following gene: 37519828

Centisome position: 5.73

GC content: 61.31

Gene sequence:

>654_bases
ATGGATGAACAACAAAAAGTATCGGCGGACGTCGAAAAAGCGTTCGAGCAGGGAGTCGGCATGATCCAGCCCGCTGAAGG
CCAGCCCGCGCCGGGCGCCCAGGACGGCAATGCCGGGGCAGGGGTCTCAGGCGAAGAGCTTGATACGATCGTCGAGCAGG
CCCTCGACAGCGAAGCGCCCGAGGCGGCCCGCTCGGTGGGGGTGCGCAACGCCGTCGAGCAGTTCAATGCTCTCGAAGTC
GACGACAAACTGGCGGTGCTCTACTACCTGTACGAGGCGATGGGCGAGTCGGTCACCCCCGCCGCCCCGGGTGCTGCTGA
TATCGAATTGACCACTGCCTTCTTCGGTGAATTCAACGCCCTCACGGACGGCGATACCCAACTAGAGGCGATGCGCGCCC
TGGTGCGCTGCGAGGACAACACCCTCGGCCGCGAGTACGGCAAACTGAGCGAGAATAACAAACTGGTTATCTGGTACCTG
CTTGCCGAGCGCATGGGCGACGACGTGATCGGCATGCCCGACGATTACCAACTTGGCGATCTCGGCCAGCAGAATCTGGT
GCACGTCAAGGAACTGGATTTCGAGCAGCAAATCACTTTCCTGCGCGATGTCGTCAATCCCATGGGCCACGATCCGATCG
AGCGAGCAGTCTAA

Upstream 100 bases:

>100_bases
CTCTGCCCGCACGCGCCGTCTGATTCCATCCGCAGGGGGAAGGAGGTCCCCGCCGTTGCTCCTAGGCTTGGGGTGAGGAA
CTCAGGAGCCACGTCCATAT

Downstream 100 bases:

>100_bases
AGCAGGCTGACAAGCAATGGGCGGGGACGGCAAAAATCGCCTCTCCCGCCTGTGCTTGCGGAGAGTTGTCGGAAGGCATT
GCATTCTCCATAGAAACAGA

Product: hypothetical protein

Products: NA

Alternate protein names: OCP; RCP [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MDEQQKVSADVEKAFEQGVGMIQPAEGQPAPGAQDGNAGAGVSGEELDTIVEQALDSEAPEAARSVGVRNAVEQFNALEV
DDKLAVLYYLYEAMGESVTPAAPGAADIELTTAFFGEFNALTDGDTQLEAMRALVRCEDNTLGREYGKLSENNKLVIWYL
LAERMGDDVIGMPDDYQLGDLGQQNLVHVKELDFEQQITFLRDVVNPMGHDPIERAV

Sequences:

>Translated_217_residues
MDEQQKVSADVEKAFEQGVGMIQPAEGQPAPGAQDGNAGAGVSGEELDTIVEQALDSEAPEAARSVGVRNAVEQFNALEV
DDKLAVLYYLYEAMGESVTPAAPGAADIELTTAFFGEFNALTDGDTQLEAMRALVRCEDNTLGREYGKLSENNKLVIWYL
LAERMGDDVIGMPDDYQLGDLGQQNLVHVKELDFEQQITFLRDVVNPMGHDPIERAV
>Mature_217_residues
MDEQQKVSADVEKAFEQGVGMIQPAEGQPAPGAQDGNAGAGVSGEELDTIVEQALDSEAPEAARSVGVRNAVEQFNALEV
DDKLAVLYYLYEAMGESVTPAAPGAADIELTTAFFGEFNALTDGDTQLEAMRALVRCEDNTLGREYGKLSENNKLVIWYL
LAERMGDDVIGMPDDYQLGDLGQQNLVHVKELDFEQQITFLRDVVNPMGHDPIERAV

Specific function: Acts as a photo-protectant. Essential for inhibiting white and blue-green light non-photochemical quenching (NPQ). Binding carotenoids improves OCP's intrinsic photoprotectant activity by broadening its absorption spectrum and facilitating the dissipation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane. Note=Associated with the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002075
- InterPro:   IPR015233 [H]

Pfam domain/function: PF09150 Carot_N; PF02136 NTF2 [H]

EC number: NA

Molecular weight: Translated: 23567; Mature: 23567

Theoretical pI: Translated: 3.81; Mature: 3.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQQKVSADVEKAFEQGVGMIQPAEGQPAPGAQDGNAGAGVSGEELDTIVEQALDSEAP
CCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH
EAARSVGVRNAVEQFNALEVDDKLAVLYYLYEAMGESVTPAAPGAADIELTTAFFGEFNA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHCCCC
LTDGDTQLEAMRALVRCEDNTLGREYGKLSENNKLVIWYLLAERMGDDVIGMPDDYQLGD
CCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCC
LGQQNLVHVKELDFEQQITFLRDVVNPMGHDPIERAV
CCCHHCHHHHHHCHHHHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure
MDEQQKVSADVEKAFEQGVGMIQPAEGQPAPGAQDGNAGAGVSGEELDTIVEQALDSEAP
CCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH
EAARSVGVRNAVEQFNALEVDDKLAVLYYLYEAMGESVTPAAPGAADIELTTAFFGEFNA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHCCCC
LTDGDTQLEAMRALVRCEDNTLGREYGKLSENNKLVIWYLLAERMGDDVIGMPDDYQLGD
CCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCC
LGQQNLVHVKELDFEQQITFLRDVVNPMGHDPIERAV
CCCHHCHHHHHHCHHHHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA