Click here to switch to the map view.

The map label for this gene is 37519828

Identifier: 37519828

GI number: 37519828

Start: 265494

End: 266048

Strand: Reverse

Name: 37519828

Synonym: gll0259

Alternate gene names: NA

Gene position: 266048-265494 (Counterclockwise)

Preceding gene: 37519829

Following gene: 37519827

Centisome position: 5.71

GC content: 58.74

Gene sequence:

>555_bases
ATGGATGAGCAACAAAAAGCAGGTACAGTGAACGAGGCGAACATCGGTTCTGATCTCGAACAATTGCAGGAGACGGATCA
GCCCTTGCGCAGCGAAGCGCCCGAGGCTGTTCGCTCCGCGCAATTGGAGCATGCGGTCGGGCAGTTCAACGCACTCGAAG
TTGACGACAAGCTGGCCGTACTGTACGGCGTCTACAAGTTGTCCGGTCAAGCGATCGACTCTGCGACACCCGACGATGCC
AATTTCGAGATGACCCGCGAATTTTTTGGCGAGTTTGATGCCCTGCCCCAGGGCGAAGCTCAGCTTGAGGCGATGCGCGC
GTTGCTGCGCCGCGACGGCAATGCCATCGGTCACATTTATAGCCGGTATACCGAGACCGAAAGGTTGGCCATCTGGCTGC
TGCTGGCCAAGCGCATGGGCAGCGACGTGATCGGCGTGCCCGCAGGGTACCAACTGAGCGAGCAGGCTCAGACGATACTG
GCGCTGGTCCAGCCCCTCGATTTCGAGCAGCAGATTACCTTCCTGGGTGATACCGTCAAGGACACGGATCGCTAA

Upstream 100 bases:

>100_bases
AACAGAAAATCGATGTCAAAATGTTTCATTCCTGAGGGAGAAGGCTCACCATCTGTTCTGGCTTACTTTGGTCAGTGACG
TTCAAGAGGCGCATCGAAAT

Downstream 100 bases:

>100_bases
GACCCTATAGGAAACCATCGCAGCGGAGGGCTGTCCGCCCTCCGCTGCCCGGCAATGGAGGCCCCTTTGCAGACGACTGA
ACCGATTGACCGCCAACCCG

Product: hypothetical protein

Products: NA

Alternate protein names: OCP; RCP [H]

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MDEQQKAGTVNEANIGSDLEQLQETDQPLRSEAPEAVRSAQLEHAVGQFNALEVDDKLAVLYGVYKLSGQAIDSATPDDA
NFEMTREFFGEFDALPQGEAQLEAMRALLRRDGNAIGHIYSRYTETERLAIWLLLAKRMGSDVIGVPAGYQLSEQAQTIL
ALVQPLDFEQQITFLGDTVKDTDR

Sequences:

>Translated_184_residues
MDEQQKAGTVNEANIGSDLEQLQETDQPLRSEAPEAVRSAQLEHAVGQFNALEVDDKLAVLYGVYKLSGQAIDSATPDDA
NFEMTREFFGEFDALPQGEAQLEAMRALLRRDGNAIGHIYSRYTETERLAIWLLLAKRMGSDVIGVPAGYQLSEQAQTIL
ALVQPLDFEQQITFLGDTVKDTDR
>Mature_184_residues
MDEQQKAGTVNEANIGSDLEQLQETDQPLRSEAPEAVRSAQLEHAVGQFNALEVDDKLAVLYGVYKLSGQAIDSATPDDA
NFEMTREFFGEFDALPQGEAQLEAMRALLRRDGNAIGHIYSRYTETERLAIWLLLAKRMGSDVIGVPAGYQLSEQAQTIL
ALVQPLDFEQQITFLGDTVKDTDR

Specific function: Acts as a photo-protectant. Essential for inhibiting white and blue-green light non-photochemical quenching (NPQ). Binding carotenoids improves OCP's intrinsic photoprotectant activity by broadening its absorption spectrum and facilitating the dissipation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane. Note=Associated with the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002075
- InterPro:   IPR015233 [H]

Pfam domain/function: PF09150 Carot_N; PF02136 NTF2 [H]

EC number: NA

Molecular weight: Translated: 20392; Mature: 20392

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQQKAGTVNEANIGSDLEQLQETDQPLRSEAPEAVRSAQLEHAVGQFNALEVDDKLAV
CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
LYGVYKLSGQAIDSATPDDANFEMTREFFGEFDALPQGEAQLEAMRALLRRDGNAIGHIY
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
SRYTETERLAIWLLLAKRMGSDVIGVPAGYQLSEQAQTILALVQPLDFEQQITFLGDTVK
HHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
DTDR
CCCC
>Mature Secondary Structure
MDEQQKAGTVNEANIGSDLEQLQETDQPLRSEAPEAVRSAQLEHAVGQFNALEVDDKLAV
CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
LYGVYKLSGQAIDSATPDDANFEMTREFFGEFDALPQGEAQLEAMRALLRRDGNAIGHIY
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
SRYTETERLAIWLLLAKRMGSDVIGVPAGYQLSEQAQTILALVQPLDFEQQITFLGDTVK
HHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
DTDR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA