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The map label for this gene is yidC

Identifier: 34499859

GI number: 34499859

Start: 4748648

End: 4750285

Strand: Reverse

Name: yidC

Synonym: CV_4404

Alternate gene names: 34499859

Gene position: 4750285-4748648 (Counterclockwise)

Preceding gene: 34499860

Following gene: 34499858

Centisome position: 99.98

GC content: 64.22

Gene sequence:

>1638_bases
ATGGATTCCAAGCGACTGATAATCTTTGTTCTACTGTCCGTGGGCATCCTGTTTGGGTGGAATGAATATTTCATGCCCAA
GCACACCCCGCAACAGCAAGCGGCCAAGACCCAGGCCACGACCGGCGCCGCCAACAACGTGGCGCAGCCGGCCGACGCCA
ACAAGCTGACCCGCGGCCAGCGCATCCAAGTCAAGACCGACCTGGTCGAAGCCGAGATCGATACCGTGGGCGGCGACCTG
CGCTCGCTCAAGCTGCTGAAGCACGGCGCCGCCGAGGACCACAAGCAGCCGTTCCAGCTGTTTGAAGACAGCGCCAAGCG
CGTCTACGTGGCCCAGACCGGCCTGGTGGCCGCCAGCAACCCGGCGCTGCCGACGCATAAAACCGTGTTCACCAGCGACA
AGCCCAGCTACCAGCTGACCGGCGACACGCTGGAGGTGAAGCTGACCGCGCCGGACGCCAACGGCGTCAAGGTGAGCAAG
GTCTACACCTTCAAGAAGAACAGCTATGAAATCGGCGTCCGTTACGACATCGTGAACGGCGGCGCCGCGCCGCTGGCCCC
CACCGCCTACTACCGCCTGCTGCGCGACAGCCAGGCGCCGGAAGGCGAAGGCCGCATGGCCCACACCTACACCGGCCCGG
CCGTGTACACCTCGGAACATAAGTTCCAGAAGGTGAGCTTCGACGACCTGGCCAAGGGCAAGGGCGACTACGCCAAGACC
ACCACCGACGGCTGGGTGGCGATGCTGCAGCACTACTTCATGTCCGCCTGGATCCTGAAGCCGCTGGACGGCGCCTCCGT
GTGCAAGGACGAGCGTTCCTGCCGCTTCGAGCTGAAGGAAACCGCCGGCCTGAACTCCGCCGCCGCGCTGGTGGACTACG
CCACCGTGGCCCCGGGCAAGAGCCTGAGCGTGTCCGTGCCGCTGTACGCCGGTCCGGAAGAGTACAACATCATCTCCAAG
CTGGCCGACGGCATGGAGTACGCCAAGGACTTCGGCATCTTCTACATCTTCGCCTCGCCGCTGTTCTGGCTGCTGGTGAA
GCTGCATGGCCTGGTGAGCAACTGGGGCTGGGCGATCGTGCTGCTGACGCTGACCGTGAAGGCGGTGTTCTACCCGCTGA
CCGCCGCGTCCTACCGCTCGATGGCCAAGATGAAGGCCCTGGCGCCGCGCCTGGAGCGCCTGAAGGCGCAGCACGGCGAC
GACCGCATGAAGTTCCAGCAGGCGGTGATGGAGATGTACAAGACCGAGAAGGTCAACCCGCTGGGCGGCTGCCTGCCCAT
GCTGATCCAGATCCCGGTGTTCATCGGCCTGTACTGGGCGCTGCTGGCTTCCGTGGAACTGCGCGGCGCGCCGTGGGTGC
TGTGGTACACCGACCTGGCCCGCCCGGACCCGTACTACATCCTGCCGGTGATCATGGCCGCCACCATGTTCCTGCAGACC
TTCCTGAACCCGCCGCCGGCCGACCCGATGCAGGCGAAGATGATGAAGATCATGCCGCTGGCCTTCTCCGCGCTGTTCTT
CTTCTTCCCGGCCGGCCTGGTGCTGTACTACGTGGTCAACAACGTGCTGTCGATGGCCCAGCAGTGGTTCATCAACAAGC
AGATCGAAAAGAGCAACAAGGCCGCGCTGCAATCCTGA

Upstream 100 bases:

>100_bases
CTCAAGGGCGGCTGTCTGGCCGCCAGACGCATCTGCCGTTGCCATCCCTGGGGCGGCAGCGGCTATGACCCGGTTCCCTG
AACTTTCCGGTATCGAGAAG

Downstream 100 bases:

>100_bases
GCGCCCCGTCCGAATTGCTGATGGAACCCGGCCACTGGCCGGGTTTTTTGCTGGATAATTGAGTGATGATAGCCGCAGCC
GGCCGCCGGCTGCCCAAGGA

Product: inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MDSKRLIIFVLLSVGILFGWNEYFMPKHTPQQQAAKTQATTGAANNVAQPADANKLTRGQRIQVKTDLVEAEIDTVGGDL
RSLKLLKHGAAEDHKQPFQLFEDSAKRVYVAQTGLVAASNPALPTHKTVFTSDKPSYQLTGDTLEVKLTAPDANGVKVSK
VYTFKKNSYEIGVRYDIVNGGAAPLAPTAYYRLLRDSQAPEGEGRMAHTYTGPAVYTSEHKFQKVSFDDLAKGKGDYAKT
TTDGWVAMLQHYFMSAWILKPLDGASVCKDERSCRFELKETAGLNSAAALVDYATVAPGKSLSVSVPLYAGPEEYNIISK
LADGMEYAKDFGIFYIFASPLFWLLVKLHGLVSNWGWAIVLLTLTVKAVFYPLTAASYRSMAKMKALAPRLERLKAQHGD
DRMKFQQAVMEMYKTEKVNPLGGCLPMLIQIPVFIGLYWALLASVELRGAPWVLWYTDLARPDPYYILPVIMAATMFLQT
FLNPPPADPMQAKMMKIMPLAFSALFFFFPAGLVLYYVVNNVLSMAQQWFINKQIEKSNKAALQS

Sequences:

>Translated_545_residues
MDSKRLIIFVLLSVGILFGWNEYFMPKHTPQQQAAKTQATTGAANNVAQPADANKLTRGQRIQVKTDLVEAEIDTVGGDL
RSLKLLKHGAAEDHKQPFQLFEDSAKRVYVAQTGLVAASNPALPTHKTVFTSDKPSYQLTGDTLEVKLTAPDANGVKVSK
VYTFKKNSYEIGVRYDIVNGGAAPLAPTAYYRLLRDSQAPEGEGRMAHTYTGPAVYTSEHKFQKVSFDDLAKGKGDYAKT
TTDGWVAMLQHYFMSAWILKPLDGASVCKDERSCRFELKETAGLNSAAALVDYATVAPGKSLSVSVPLYAGPEEYNIISK
LADGMEYAKDFGIFYIFASPLFWLLVKLHGLVSNWGWAIVLLTLTVKAVFYPLTAASYRSMAKMKALAPRLERLKAQHGD
DRMKFQQAVMEMYKTEKVNPLGGCLPMLIQIPVFIGLYWALLASVELRGAPWVLWYTDLARPDPYYILPVIMAATMFLQT
FLNPPPADPMQAKMMKIMPLAFSALFFFFPAGLVLYYVVNNVLSMAQQWFINKQIEKSNKAALQS
>Mature_545_residues
MDSKRLIIFVLLSVGILFGWNEYFMPKHTPQQQAAKTQATTGAANNVAQPADANKLTRGQRIQVKTDLVEAEIDTVGGDL
RSLKLLKHGAAEDHKQPFQLFEDSAKRVYVAQTGLVAASNPALPTHKTVFTSDKPSYQLTGDTLEVKLTAPDANGVKVSK
VYTFKKNSYEIGVRYDIVNGGAAPLAPTAYYRLLRDSQAPEGEGRMAHTYTGPAVYTSEHKFQKVSFDDLAKGKGDYAKT
TTDGWVAMLQHYFMSAWILKPLDGASVCKDERSCRFELKETAGLNSAAALVDYATVAPGKSLSVSVPLYAGPEEYNIISK
LADGMEYAKDFGIFYIFASPLFWLLVKLHGLVSNWGWAIVLLTLTVKAVFYPLTAASYRSMAKMKALAPRLERLKAQHGD
DRMKFQQAVMEMYKTEKVNPLGGCLPMLIQIPVFIGLYWALLASVELRGAPWVLWYTDLARPDPYYILPVIMAATMFLQT
FLNPPPADPMQAKMMKIMPLAFSALFFFFPAGLVLYYVVNNVLSMAQQWFINKQIEKSNKAALQS

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790140, Length=554, Percent_Identity=36.4620938628159, Blast_Score=354, Evalue=7e-99,
Organism=Drosophila melanogaster, GI24662345, Length=191, Percent_Identity=28.2722513089005, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21356443, Length=191, Percent_Identity=28.2722513089005, Blast_Score=82, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OXAA_CHRVO (Q7NPT8)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_904074.1
- ProteinModelPortal:   Q7NPT8
- SMR:   Q7NPT8
- GeneID:   2549646
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_4404
- NMPDR:   fig|243365.1.peg.4404
- HOGENOM:   HBG507812
- OMA:   TYRGAAF
- PhylomeDB:   Q7NPT8
- ProtClustDB:   PRK01318
- BioCyc:   CVIO243365:CV_4404-MONOMER
- HAMAP:   MF_01810
- InterPro:   IPR019998
- InterPro:   IPR001708
- PANTHER:   PTHR12428
- PRINTS:   PR00701
- PRINTS:   PR01900
- TIGRFAMs:   TIGR03593
- TIGRFAMs:   TIGR03592

Pfam domain/function: PF02096 60KD_IMP

EC number: NA

Molecular weight: Translated: 60534; Mature: 60534

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x14a8c84c)-; HASH(0x1446d41c)-; HASH(0x13a1edc0)-; HASH(0x10a24eb8)-; HASH(0xfffaf64)-; HASH(0x1489f450)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSKRLIIFVLLSVGILFGWNEYFMPKHTPQQQAAKTQATTGAANNVAQPADANKLTRGQ
CCCCCEEHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
RIQVKTDLVEAEIDTVGGDLRSLKLLKHGAAEDHKQPFQLFEDSAKRVYVAQTGLVAASN
EEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEEECCEEEECC
PALPTHKTVFTSDKPSYQLTGDTLEVKLTAPDANGVKVSKVYTFKKNSYEIGVRYDIVNG
CCCCCCCEEEECCCCCEEEECCEEEEEEECCCCCCEEEEEEEEEECCCEEEEEEEEEECC
GAAPLAPTAYYRLLRDSQAPEGEGRMAHTYTGPAVYTSEHKFQKVSFDDLAKGKGDYAKT
CCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCEEECCHHHHHCCCCCCCCC
TTDGWVAMLQHYFMSAWILKPLDGASVCKDERSCRFELKETAGLNSAAALVDYATVAPGK
CCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEHHHCCCCHHHHHHHHHHCCCCC
SLSVSVPLYAGPEEYNIISKLADGMEYAKDFGIFYIFASPLFWLLVKLHGLVSNWGWAIV
CEEEEECEEECCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCCHHHH
LLTLTVKAVFYPLTAASYRSMAKMKALAPRLERLKAQHGDDRMKFQQAVMEMYKTEKVNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
LGGCLPMLIQIPVFIGLYWALLASVELRGAPWVLWYTDLARPDPYYILPVIMAATMFLQT
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
FLNPPPADPMQAKMMKIMPLAFSALFFFFPAGLVLYYVVNNVLSMAQQWFINKQIEKSNK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AALQS
HHCCH
>Mature Secondary Structure
MDSKRLIIFVLLSVGILFGWNEYFMPKHTPQQQAAKTQATTGAANNVAQPADANKLTRGQ
CCCCCEEHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
RIQVKTDLVEAEIDTVGGDLRSLKLLKHGAAEDHKQPFQLFEDSAKRVYVAQTGLVAASN
EEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEEECCEEEECC
PALPTHKTVFTSDKPSYQLTGDTLEVKLTAPDANGVKVSKVYTFKKNSYEIGVRYDIVNG
CCCCCCCEEEECCCCCEEEECCEEEEEEECCCCCCEEEEEEEEEECCCEEEEEEEEEECC
GAAPLAPTAYYRLLRDSQAPEGEGRMAHTYTGPAVYTSEHKFQKVSFDDLAKGKGDYAKT
CCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCEEEECCCCEEECCHHHHHCCCCCCCCC
TTDGWVAMLQHYFMSAWILKPLDGASVCKDERSCRFELKETAGLNSAAALVDYATVAPGK
CCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEHHHCCCCHHHHHHHHHHCCCCC
SLSVSVPLYAGPEEYNIISKLADGMEYAKDFGIFYIFASPLFWLLVKLHGLVSNWGWAIV
CEEEEECEEECCHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCCHHHH
LLTLTVKAVFYPLTAASYRSMAKMKALAPRLERLKAQHGDDRMKFQQAVMEMYKTEKVNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
LGGCLPMLIQIPVFIGLYWALLASVELRGAPWVLWYTDLARPDPYYILPVIMAATMFLQT
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
FLNPPPADPMQAKMMKIMPLAFSALFFFFPAGLVLYYVVNNVLSMAQQWFINKQIEKSNK
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
AALQS
HHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 14500782