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The map label for this gene is ylbK [H]

Identifier: 34499829

GI number: 34499829

Start: 4717207

End: 4718106

Strand: Reverse

Name: ylbK [H]

Synonym: CV_4374

Alternate gene names: 34499829

Gene position: 4718106-4717207 (Counterclockwise)

Preceding gene: 34499830

Following gene: 34499828

Centisome position: 99.31

GC content: 67.67

Gene sequence:

>900_bases
ATGATTAGCAAGAGCATTTTACGTCCCGCGCTGCTGGCCGGGATCGCCTCCCTGTTGTCCGCCTGCATGACCGCCACGCC
GCCGGACAGCGGCCAGGCCGCCAAGCCGCTGCCCAAACCGAAAATCGCGCTGGCGCTCGGCGGCGGCGCGGTGAAGGGCT
TCGCCCACATCGGCGTGATCAAGGTGCTGGAAGGCGCCGGCATCACGCCCGACATCATCGTCGGCACCAGCGCCGGCAGC
GTGGTCGGCAGCCTGTACGCATCCGGCCTCAACGGCATGCAGCTGCAGCAGCGCGCGATCGCGCTGGACCAGGCCGACCT
GACCGACTGGACGCTGTCCACCAAGGGCGTGCTCAAGGGCGAGAAGCTGCAGAACTGGATCAACGCCCAGGTGGGCAACC
GACCGCTGGAGAAGCTGAGCCGGCCGTTCGCCGCGGTGGCCACCGAGCTGGATTCCGGCCGCCGGGTGGTGTTCCGCGTC
GGCAACACCGGCCAGGCGGTGCGGGCCTCGGCCAGCATTCCCAATGTGTTCCTGCCGGTGAAGATAGGCGGCAAGAGCTA
TGTCGACGGCGGCCTGGTCAGCCCGGTGCCGGTCAGCGCCGCGCGCGAGATGGGCGCGCAGTTCGTGATCGCCGTCGACA
TCACCGGCCGTCCCAAGGCCGGCCGCGCCACCGGCTTCCTGTCCATGCTGGACCAGAGCCTGAGCATCATGAACGGCCCG
GCGCTGACGCAGGAGCTGAAACAGGCCGATGTGGTGATCCACCCGAACGTGCTGAACATCGGCGCGGCCGAATTCGAGGC
CCGCAACCAGGCGATCCTGGAAGGCGAGAAGGCGGCGCAGCAGATGTTGCCGCAGATCCGCCAATTGCTGCAGCAAAAGA
CCCTGGCGCTGGCTAAATAA

Upstream 100 bases:

>100_bases
TCGAATTGGAGGGCGCGCGGCATCTGAATTACGTGATGCTGGATCCCGCGCCCGTTGGGGCGGCCCGAAGGCCGCCGATG
TCTGAAAGACCGATGCAATC

Downstream 100 bases:

>100_bases
GGGAATAGGCTGGATGATGTAGGCCGCGCGCCGATGCCCGGTCCCGCATCGGCGCTTGTGAACCCATCGCTATTTGGAGT
CGGCATGATCAAACTGCACG

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MISKSILRPALLAGIASLLSACMTATPPDSGQAAKPLPKPKIALALGGGAVKGFAHIGVIKVLEGAGITPDIIVGTSAGS
VVGSLYASGLNGMQLQQRAIALDQADLTDWTLSTKGVLKGEKLQNWINAQVGNRPLEKLSRPFAAVATELDSGRRVVFRV
GNTGQAVRASASIPNVFLPVKIGGKSYVDGGLVSPVPVSAAREMGAQFVIAVDITGRPKAGRATGFLSMLDQSLSIMNGP
ALTQELKQADVVIHPNVLNIGAAEFEARNQAILEGEKAAQQMLPQIRQLLQQKTLALAK

Sequences:

>Translated_299_residues
MISKSILRPALLAGIASLLSACMTATPPDSGQAAKPLPKPKIALALGGGAVKGFAHIGVIKVLEGAGITPDIIVGTSAGS
VVGSLYASGLNGMQLQQRAIALDQADLTDWTLSTKGVLKGEKLQNWINAQVGNRPLEKLSRPFAAVATELDSGRRVVFRV
GNTGQAVRASASIPNVFLPVKIGGKSYVDGGLVSPVPVSAAREMGAQFVIAVDITGRPKAGRATGFLSMLDQSLSIMNGP
ALTQELKQADVVIHPNVLNIGAAEFEARNQAILEGEKAAQQMLPQIRQLLQQKTLALAK
>Mature_299_residues
MISKSILRPALLAGIASLLSACMTATPPDSGQAAKPLPKPKIALALGGGAVKGFAHIGVIKVLEGAGITPDIIVGTSAGS
VVGSLYASGLNGMQLQQRAIALDQADLTDWTLSTKGVLKGEKLQNWINAQVGNRPLEKLSRPFAAVATELDSGRRVVFRV
GNTGQAVRASASIPNVFLPVKIGGKSYVDGGLVSPVPVSAAREMGAQFVIAVDITGRPKAGRATGFLSMLDQSLSIMNGP
ALTQELKQADVVIHPNVLNIGAAEFEARNQAILEGEKAAQQMLPQIRQLLQQKTLALAK

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=194, Percent_Identity=32.4742268041237, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI116256487, Length=194, Percent_Identity=32.4742268041237, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI260656039, Length=194, Percent_Identity=32.4742268041237, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI260656037, Length=194, Percent_Identity=32.4742268041237, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI260656043, Length=194, Percent_Identity=32.4742268041237, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI148727290, Length=204, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI148727335, Length=204, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=4e-19,
Organism=Escherichia coli, GI226510936, Length=180, Percent_Identity=42.2222222222222, Blast_Score=132, Evalue=3e-32,
Organism=Caenorhabditis elegans, GI71997299, Length=164, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71997289, Length=164, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=187, Percent_Identity=31.0160427807487, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281376913, Length=211, Percent_Identity=28.9099526066351, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI28571388, Length=211, Percent_Identity=27.9620853080569, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 31079; Mature: 31079

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKSILRPALLAGIASLLSACMTATPPDSGQAAKPLPKPKIALALGGGAVKGFAHIGVI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
KVLEGAGITPDIIVGTSAGSVVGSLYASGLNGMQLQQRAIALDQADLTDWTLSTKGVLKG
HHHCCCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCH
EKLQNWINAQVGNRPLEKLSRPFAAVATELDSGRRVVFRVGNTGQAVRASASIPNVFLPV
HHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCEEEEE
KIGGKSYVDGGLVSPVPVSAAREMGAQFVIAVDITGRPKAGRATGFLSMLDQSLSIMNGP
EECCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCH
ALTQELKQADVVIHPNVLNIGAAEFEARNQAILEGEKAAQQMLPQIRQLLQQKTLALAK
HHHHHHHHCCEEECCCEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MISKSILRPALLAGIASLLSACMTATPPDSGQAAKPLPKPKIALALGGGAVKGFAHIGVI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
KVLEGAGITPDIIVGTSAGSVVGSLYASGLNGMQLQQRAIALDQADLTDWTLSTKGVLKG
HHHCCCCCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCH
EKLQNWINAQVGNRPLEKLSRPFAAVATELDSGRRVVFRVGNTGQAVRASASIPNVFLPV
HHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCCEEEEE
KIGGKSYVDGGLVSPVPVSAAREMGAQFVIAVDITGRPKAGRATGFLSMLDQSLSIMNGP
EECCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCH
ALTQELKQADVVIHPNVLNIGAAEFEARNQAILEGEKAAQQMLPQIRQLLQQKTLALAK
HHHHHHHHCCEEECCCEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]