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The map label for this gene is ycfJ [H]

Identifier: 34499826

GI number: 34499826

Start: 4714640

End: 4715347

Strand: Direct

Name: ycfJ [H]

Synonym: CV_4371

Alternate gene names: 34499826

Gene position: 4714640-4715347 (Clockwise)

Preceding gene: 34499823

Following gene: 34499837

Centisome position: 99.23

GC content: 70.76

Gene sequence:

>708_bases
ATGAAACAATCGGTATTGATCGCCAGCGTGCTCGGCGGCGGCATCGCGCTCGGCGCGGTGGGCGTGGCCGGCATCCAGGC
CATGAAGTCGTCGAAGCCGGAAACCGCCGTCGTCGCCAGCGCGCCGCTGGCCCAGGCTTCCGCTCCGGCCATCCAGGCGC
TCGCGCCCAGCGCGGCCTCGTCCACCCTCGCGCAAGCGGCGCCGCAGGCGTCTACGCCCGCCGCCGCCGCGGTCCCCAAA
GCGGAGCCGGCGCCGAAGCCGAAGCCGGTTCATGCCACCCACGCCCGAATCCTGGGCGTGACCCCGATCCGCGAAGCGGG
CACCGAGCCCAAGCAGGTCTGCCACCAGGAGCAGGTGGTGCACCAGGCGCCGGTGCAGGATGAAAACCGCATCGCCGGCT
CGGTGATCGGCGGCGTGGTCGGCGGCCTGCTCGGCAACCAGGTGGGCGGCGGCAACGGCAAGAAGGCGGCCACCGTGATC
GGCGCGCTGGCCGGCGGCTATGCCGGCAACCGGGTGCAGGAAGGCATGCAGCAGCGCGACCAGGTGGCCGGCACCCGCAC
CATCTGCAACACCGAGGACGTGAAGACCGAGAAGATCGTCGGCTACAACGTGCGCTACTCGCTGGACGGCAAGACCGGCA
CCGTGCGCATGGACGAAAAGCCGAAGGGCAAGACGCTGCCGGCCAAGGACGGCAAGCTGCTGATCTGA

Upstream 100 bases:

>100_bases
ACCTGCAGTGACAAATGGCACACACAGCTGTTGCAACTGTTTGTCGATAATCTCAGTCGAAGGCATGAGTGACCCAGTGC
GTCACCTCAGGGAGAGAACA

Downstream 100 bases:

>100_bases
TTCCGGCTCATCCGCCAAGACCAGGCCCGGCATCGCCGGGCCTTCTTGCTTGCGCGCCTCAGGCCGCCGCCCGCCTCGCC
TCGCCGGCGCGCTGCCGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKQSVLIASVLGGGIALGAVGVAGIQAMKSSKPETAVVASAPLAQASAPAIQALAPSAASSTLAQAAPQASTPAAAAVPK
AEPAPKPKPVHATHARILGVTPIREAGTEPKQVCHQEQVVHQAPVQDENRIAGSVIGGVVGGLLGNQVGGGNGKKAATVI
GALAGGYAGNRVQEGMQQRDQVAGTRTICNTEDVKTEKIVGYNVRYSLDGKTGTVRMDEKPKGKTLPAKDGKLLI

Sequences:

>Translated_235_residues
MKQSVLIASVLGGGIALGAVGVAGIQAMKSSKPETAVVASAPLAQASAPAIQALAPSAASSTLAQAAPQASTPAAAAVPK
AEPAPKPKPVHATHARILGVTPIREAGTEPKQVCHQEQVVHQAPVQDENRIAGSVIGGVVGGLLGNQVGGGNGKKAATVI
GALAGGYAGNRVQEGMQQRDQVAGTRTICNTEDVKTEKIVGYNVRYSLDGKTGTVRMDEKPKGKTLPAKDGKLLI
>Mature_235_residues
MKQSVLIASVLGGGIALGAVGVAGIQAMKSSKPETAVVASAPLAQASAPAIQALAPSAASSTLAQAAPQASTPAAAAVPK
AEPAPKPKPVHATHARILGVTPIREAGTEPKQVCHQEQVVHQAPVQDENRIAGSVIGGVVGGLLGNQVGGGNGKKAATVI
GALAGGYAGNRVQEGMQQRDQVAGTRTICNTEDVKTEKIVGYNVRYSLDGKTGTVRMDEKPKGKTLPAKDGKLLI

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=143, Percent_Identity=46.1538461538462, Blast_Score=133, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 23623; Mature: 23623

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSVLIASVLGGGIALGAVGVAGIQAMKSSKPETAVVASAPLAQASAPAIQALAPSAAS
CCCCEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHCCCCHHHHHCCCHHH
STLAQAAPQASTPAAAAVPKAEPAPKPKPVHATHARILGVTPIREAGTEPKQVCHQEQVV
HHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCHHHHHHHHHHH
HQAPVQDENRIAGSVIGGVVGGLLGNQVGGGNGKKAATVIGALAGGYAGNRVQEGMQQRD
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
QVAGTRTICNTEDVKTEKIVGYNVRYSLDGKTGTVRMDEKPKGKTLPAKDGKLLI
HHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEC
>Mature Secondary Structure
MKQSVLIASVLGGGIALGAVGVAGIQAMKSSKPETAVVASAPLAQASAPAIQALAPSAAS
CCCCEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHCCCCHHHHHCCCHHH
STLAQAAPQASTPAAAAVPKAEPAPKPKPVHATHARILGVTPIREAGTEPKQVCHQEQVV
HHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCHHHHHHHHHHH
HQAPVQDENRIAGSVIGGVVGGLLGNQVGGGNGKKAATVIGALAGGYAGNRVQEGMQQRD
HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
QVAGTRTICNTEDVKTEKIVGYNVRYSLDGKTGTVRMDEKPKGKTLPAKDGKLLI
HHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]