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The map label for this gene is oppC [H]

Identifier: 34499782

GI number: 34499782

Start: 4667844

End: 4668758

Strand: Reverse

Name: oppC [H]

Synonym: CV_4327

Alternate gene names: 34499782

Gene position: 4668758-4667844 (Counterclockwise)

Preceding gene: 34499783

Following gene: 34499781

Centisome position: 98.27

GC content: 66.12

Gene sequence:

>915_bases
ATGATCAAGAGCAAGCAAGCCGCCGCCGTGGCGGCAATCGAGAATGGCCTGGCCGAGGCCGCGGTGGAAGGCCGCAGCCC
GTGGCGCGACGCGCGCATCCGCTTCCTGCGCAACAAGGCTGCCGTGTTCAGCCTGGTGGTGCTGACGCTGATCACGCTGG
CCTGTATTTTCGGACCCATGGTCCTGCCGTACAGCTATGAAGACGCGGACTGGGATGCGATCAGCCAGGCTCCGGCCCTG
GCCGGCATGCACTGGTTCGGCACCGACGCCTCGGGCCGCGACCTGCTGGTGCGCTGCCTGGTCGGCGGACGCATTTCGCT
GATGGTGGGGGCGCTGGCCACCGTGGCTTCCGTCATCCTGGGCGTGGTGTGGGGCGCGACTTCCGGCTTCCTCGGCGGCA
AGGTGGACGCGCTGATGATGCGCATCGTCGACATGATGTACGCGGTGCCCTACCTGCTGATCGCCATCCTGATGGTGACG
CTGCTGGGCCGCGAGTTCTACCTGGTGGTGCTGACCATCACCGTGTTCTCCTGGATGGACATGGCGCGGGTGGTGCGCGG
CCAGACCCTGGCGATCAAGTCCAAGGAGTATGTGGAGGCTGCCCACGCGATCGGCGTGTCCACGCCCACCATCATCTTCC
GCCACATCGTCCCCAATCTGCTGGGCATCGTGGTGATCTACACCACGGTGACGGTGCCGGGCGTGATCCTGACCGAGTCG
GTGCTGTCCTTCCTCGGCCTAGGCGTGCAGGAGCCGATGACCAGCTGGGGCGTGCTGATCCAGGACGGCGCCGGCGTGAT
GGAAACCTCGCCGTGGATTCTGCTGTTCCCGGCCGGCATGCTGTCGCTGACGCTTTATTGCGCCAACTACATCGGCGACG
GCCTGCGCGACGCGCTGGACCCGAAAGACCGCTGA

Upstream 100 bases:

>100_bases
GGTGGTGCTGGTGACGGTGATCACCGTGGTGTTCAACCTCCTCGTCGACCTGGCTTACGCCGTGCTCGACCCCAAGATCC
GCTATTGAGGAGGCGGGGAA

Downstream 100 bases:

>100_bases
ACCCAGGATAGACGAGGCAAGCCATGAGCATTTTGAAAGTCAACAACCTCGGGGTTCAGTTCCAGACCAACGACGGCGTG
GTCAACGCCGTCAACGGCGT

Product: oligopeptide transport system permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MIKSKQAAAVAAIENGLAEAAVEGRSPWRDARIRFLRNKAAVFSLVVLTLITLACIFGPMVLPYSYEDADWDAISQAPAL
AGMHWFGTDASGRDLLVRCLVGGRISLMVGALATVASVILGVVWGATSGFLGGKVDALMMRIVDMMYAVPYLLIAILMVT
LLGREFYLVVLTITVFSWMDMARVVRGQTLAIKSKEYVEAAHAIGVSTPTIIFRHIVPNLLGIVVIYTTVTVPGVILTES
VLSFLGLGVQEPMTSWGVLIQDGAGVMETSPWILLFPAGMLSLTLYCANYIGDGLRDALDPKDR

Sequences:

>Translated_304_residues
MIKSKQAAAVAAIENGLAEAAVEGRSPWRDARIRFLRNKAAVFSLVVLTLITLACIFGPMVLPYSYEDADWDAISQAPAL
AGMHWFGTDASGRDLLVRCLVGGRISLMVGALATVASVILGVVWGATSGFLGGKVDALMMRIVDMMYAVPYLLIAILMVT
LLGREFYLVVLTITVFSWMDMARVVRGQTLAIKSKEYVEAAHAIGVSTPTIIFRHIVPNLLGIVVIYTTVTVPGVILTES
VLSFLGLGVQEPMTSWGVLIQDGAGVMETSPWILLFPAGMLSLTLYCANYIGDGLRDALDPKDR
>Mature_304_residues
MIKSKQAAAVAAIENGLAEAAVEGRSPWRDARIRFLRNKAAVFSLVVLTLITLACIFGPMVLPYSYEDADWDAISQAPAL
AGMHWFGTDASGRDLLVRCLVGGRISLMVGALATVASVILGVVWGATSGFLGGKVDALMMRIVDMMYAVPYLLIAILMVT
LLGREFYLVVLTITVFSWMDMARVVRGQTLAIKSKEYVEAAHAIGVSTPTIIFRHIVPNLLGIVVIYTTVTVPGVILTES
VLSFLGLGVQEPMTSWGVLIQDGAGVMETSPWILLFPAGMLSLTLYCANYIGDGLRDALDPKDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=304, Percent_Identity=55.5921052631579, Blast_Score=330, Evalue=1e-91,
Organism=Escherichia coli, GI1787054, Length=279, Percent_Identity=37.9928315412186, Blast_Score=204, Evalue=7e-54,
Organism=Escherichia coli, GI1787760, Length=261, Percent_Identity=34.8659003831418, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1789964, Length=293, Percent_Identity=35.1535836177474, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1788505, Length=221, Percent_Identity=33.4841628959276, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=31.1203319502075, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787549, Length=284, Percent_Identity=27.8169014084507, Blast_Score=107, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32755; Mature: 32755

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSKQAAAVAAIENGLAEAAVEGRSPWRDARIRFLRNKAAVFSLVVLTLITLACIFGPM
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLPYSYEDADWDAISQAPALAGMHWFGTDASGRDLLVRCLVGGRISLMVGALATVASVIL
HCCCCCCCCCHHHHHHCHHHHCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GVVWGATSGFLGGKVDALMMRIVDMMYAVPYLLIAILMVTLLGREFYLVVLTITVFSWMD
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MARVVRGQTLAIKSKEYVEAAHAIGVSTPTIIFRHIVPNLLGIVVIYTTVTVPGVILTES
HHHHHCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VLSFLGLGVQEPMTSWGVLIQDGAGVMETSPWILLFPAGMLSLTLYCANYIGDGLRDALD
HHHHHCCCCCCHHHHCCEEEECCCCCEECCCEEEEECHHHHHHHHHHHHHHCHHHHHCCC
PKDR
CCCC
>Mature Secondary Structure
MIKSKQAAAVAAIENGLAEAAVEGRSPWRDARIRFLRNKAAVFSLVVLTLITLACIFGPM
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLPYSYEDADWDAISQAPALAGMHWFGTDASGRDLLVRCLVGGRISLMVGALATVASVIL
HCCCCCCCCCHHHHHHCHHHHCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GVVWGATSGFLGGKVDALMMRIVDMMYAVPYLLIAILMVTLLGREFYLVVLTITVFSWMD
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MARVVRGQTLAIKSKEYVEAAHAIGVSTPTIIFRHIVPNLLGIVVIYTTVTVPGVILTES
HHHHHCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VLSFLGLGVQEPMTSWGVLIQDGAGVMETSPWILLFPAGMLSLTLYCANYIGDGLRDALD
HHHHHCCCCCCHHHHCCEEEECCCCCEECCCEEEEECHHHHHHHHHHHHHHCHHHHHCCC
PKDR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]