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The map label for this gene is yqxC [H]

Identifier: 34499756

GI number: 34499756

Start: 4641363

End: 4642109

Strand: Reverse

Name: yqxC [H]

Synonym: CV_4301

Alternate gene names: 34499756

Gene position: 4642109-4641363 (Counterclockwise)

Preceding gene: 34499760

Following gene: 34499754

Centisome position: 97.71

GC content: 69.61

Gene sequence:

>747_bases
ATGATTCGAGTGGATATTTTGCTGGTGGAACAAGGGCTTGCCGCGTCGCGGACCGCGGCGCAGAACCTGGTCGCGGCCGG
CCGCGTCAGTTGCCGCGGCGCGGTGGTGGCCAAGCCCAGCCAGAAATTTCCAGCGGATGCGGCATTCGACATCGTCGCCG
ACGAGGCCGACCGCTACGTGTCGCGCGGCGGGCTGAAGATGCGCGGCGCGCTGGACGCCGCCGGGCTGGAGATCGCCGGC
TGGACCGCGCTGGACGTCGGCCAATCCACCGGCGGCTTCACCGACTGCCTGCTGCAGGCCGGCGCGCGCCGGGTGGTGGG
CGTGGACGTCGGCCACGACCAGCTGCACCCGCGGATGCGCGAGGATGCGCGGGTCCGCTACTTTGAAGGCGTCAACGCCC
GCGCGCTGGACCGCGCGGCGCTGCTGGCCGCCAACGACGGCGACGGCTTCGATCTGATGGTGTGCGACGTGTCCTTCATC
TCGCTGAGCCTGGTGCTGCCTTCCGCCTTGCCCTTGTTGAAGCCGGGCGGCCGGCTGCTCAGCCTGGTCAAGCCGCAGTT
CGAGGTGGGGCGCGAGGGCTTGTCCAAGGGCGGCATCGTCCGCGACGAGACCCTGTACCCGCTGGTGAGGGACAAGATAG
ATCGGGTGCTGGCCGAGCAGAACATGCAGACGCTGGCCTGGTTCGACAGTCCGATCAAGGGCGGCGACGGCAACCGCGAG
TTCTTCGTCCACGCCGGGCGGCGCTGA

Upstream 100 bases:

>100_bases
CATTCCGCGCAGAAGGCCCGGGCGGGCGGCCCGGCTTGACAGCGGATGGCGGCTTCGCCAACCTGTCGCGTTCATCGGGA
TGCGGGCATCGGGAGCGGAC

Downstream 100 bases:

>100_bases
GAAACGGCAAGGCCCGCGCGAGGCGGGCCGGCGTGTTGCGGGCCAGGGCTTACTCGACGCGGATGTCGTCGTCTTCCTGG
CTGCGCACCACCAGCAGCGG

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MIRVDILLVEQGLAASRTAAQNLVAAGRVSCRGAVVAKPSQKFPADAAFDIVADEADRYVSRGGLKMRGALDAAGLEIAG
WTALDVGQSTGGFTDCLLQAGARRVVGVDVGHDQLHPRMREDARVRYFEGVNARALDRAALLAANDGDGFDLMVCDVSFI
SLSLVLPSALPLLKPGGRLLSLVKPQFEVGREGLSKGGIVRDETLYPLVRDKIDRVLAEQNMQTLAWFDSPIKGGDGNRE
FFVHAGRR

Sequences:

>Translated_248_residues
MIRVDILLVEQGLAASRTAAQNLVAAGRVSCRGAVVAKPSQKFPADAAFDIVADEADRYVSRGGLKMRGALDAAGLEIAG
WTALDVGQSTGGFTDCLLQAGARRVVGVDVGHDQLHPRMREDARVRYFEGVNARALDRAALLAANDGDGFDLMVCDVSFI
SLSLVLPSALPLLKPGGRLLSLVKPQFEVGREGLSKGGIVRDETLYPLVRDKIDRVLAEQNMQTLAWFDSPIKGGDGNRE
FFVHAGRR
>Mature_248_residues
MIRVDILLVEQGLAASRTAAQNLVAAGRVSCRGAVVAKPSQKFPADAAFDIVADEADRYVSRGGLKMRGALDAAGLEIAG
WTALDVGQSTGGFTDCLLQAGARRVVGVDVGHDQLHPRMREDARVRYFEGVNARALDRAALLAANDGDGFDLMVCDVSFI
SLSLVLPSALPLLKPGGRLLSLVKPQFEVGREGLSKGGIVRDETLYPLVRDKIDRVLAEQNMQTLAWFDSPIKGGDGNRE
FFVHAGRR

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26614; Mature: 26614

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVDILLVEQGLAASRTAAQNLVAAGRVSCRGAVVAKPSQKFPADAAFDIVADEADRYV
CEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
SRGGLKMRGALDAAGLEIAGWTALDVGQSTGGFTDCLLQAGARRVVGVDVGHDQLHPRMR
HCCCEEEECCCCCCCEEEECEEEEECCCCCCCHHHHHHHHCCCEEEEEECCHHHHCCCHH
EDARVRYFEGVNARALDRAALLAANDGDGFDLMVCDVSFISLSLVLPSALPLLKPGGRLL
CCCEEEEECCCCCHHHCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCHHH
SLVKPQFEVGREGLSKGGIVRDETLYPLVRDKIDRVLAEQNMQTLAWFDSPIKGGDGNRE
HHCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
FFVHAGRR
EEEECCCC
>Mature Secondary Structure
MIRVDILLVEQGLAASRTAAQNLVAAGRVSCRGAVVAKPSQKFPADAAFDIVADEADRYV
CEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
SRGGLKMRGALDAAGLEIAGWTALDVGQSTGGFTDCLLQAGARRVVGVDVGHDQLHPRMR
HCCCEEEECCCCCCCEEEECEEEEECCCCCCCHHHHHHHHCCCEEEEEECCHHHHCCCHH
EDARVRYFEGVNARALDRAALLAANDGDGFDLMVCDVSFISLSLVLPSALPLLKPGGRLL
CCCEEEEECCCCCHHHCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCHHH
SLVKPQFEVGREGLSKGGIVRDETLYPLVRDKIDRVLAEQNMQTLAWFDSPIKGGDGNRE
HHCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
FFVHAGRR
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]