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The map label for this gene is ybeY [C]

Identifier: 34499607

GI number: 34499607

Start: 4492681

End: 4493187

Strand: Direct

Name: ybeY [C]

Synonym: CV_4152

Alternate gene names: 34499607

Gene position: 4492681-4493187 (Clockwise)

Preceding gene: 34499606

Following gene: 34499608

Centisome position: 94.56

GC content: 63.91

Gene sequence:

>507_bases
ATGAAAAAAGCCAAGCGTAACCCGCTGCTCGCCCGCCTGGCCGGACGGCTGGAATTGACCCTGGACGTGCGCAGCGACGC
CGCCGCCCTGCCGCCCCCCGCGCTGATCCGCCGCGCCTGCCAGGCCGCGCTGCGGCGCGACGTCAAACAGGCCCAGATCA
GCATCGTCATCGTCGACGCCGCTGAAGGCCGTCAGCTCAACAACGACTATCGCGGCAAGGATTATGCGACCAACGTTTTG
TCCTTCGCGCTGAACGAGGGCGAACCGGTGGAAGGCCTGCCGCTGTTCGGCGACCTGGTGCTGTGCGCGCCGGTGGTGGA
GCAGGAAGCCGCCGAGCAGAACAAGGCGCTGATGGCCCACTACGCCCACCTGCTGGTCCACGGCATGCTGCACCTGCAGG
GCTTCGATCATGAAGAGGACGCAGAGGCCGAAGCGATGGAAGTGCTTGAAACCGTAATCGTTAAACAGCTAGGATATCCC
GATCCCTACCACGAGGAGCACATCTAA

Upstream 100 bases:

>100_bases
CGCGGCATCCATTTCCACCATTTCAACAGCAACGACGTGGTGCGCCATCCGCTGGTGCAGAAGATCGTCGACGCCTACGA
CCAATACCAAAGCAAGCAAG

Downstream 100 bases:

>100_bases
GAAATGGAAGACCCCAGTAAACCGCGACCCAGTTGGCTTGAACGCCTGTCCACCATGCTCTTGCGCGAGCCGGAAGACCG
CGAGGAGTTGATCGAGCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MKKAKRNPLLARLAGRLELTLDVRSDAAALPPPALIRRACQAALRRDVKQAQISIVIVDAAEGRQLNNDYRGKDYATNVL
SFALNEGEPVEGLPLFGDLVLCAPVVEQEAAEQNKALMAHYAHLLVHGMLHLQGFDHEEDAEAEAMEVLETVIVKQLGYP
DPYHEEHI

Sequences:

>Translated_168_residues
MKKAKRNPLLARLAGRLELTLDVRSDAAALPPPALIRRACQAALRRDVKQAQISIVIVDAAEGRQLNNDYRGKDYATNVL
SFALNEGEPVEGLPLFGDLVLCAPVVEQEAAEQNKALMAHYAHLLVHGMLHLQGFDHEEDAEAEAMEVLETVIVKQLGYP
DPYHEEHI
>Mature_168_residues
MKKAKRNPLLARLAGRLELTLDVRSDAAALPPPALIRRACQAALRRDVKQAQISIVIVDAAEGRQLNNDYRGKDYATNVL
SFALNEGEPVEGLPLFGDLVLCAPVVEQEAAEQNKALMAHYAHLLVHGMLHLQGFDHEEDAEAEAMEVLETVIVKQLGYP
DPYHEEHI

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=138, Percent_Identity=50, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CHRVO (Q7NQI5)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903822.1
- ProteinModelPortal:   Q7NQI5
- SMR:   Q7NQI5
- GeneID:   2549727
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_4152
- NMPDR:   fig|243365.1.peg.4152
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- PhylomeDB:   Q7NQI5
- ProtClustDB:   CLSK2485709
- BioCyc:   CVIO243365:CV_4152-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18581; Mature: 18581

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAKRNPLLARLAGRLELTLDVRSDAAALPPPALIRRACQAALRRDVKQAQISIVIVDA
CCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEC
AEGRQLNNDYRGKDYATNVLSFALNEGEPVEGLPLFGDLVLCAPVVEQEAAEQNKALMAH
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YAHLLVHGMLHLQGFDHEEDAEAEAMEVLETVIVKQLGYPDPYHEEHI
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKKAKRNPLLARLAGRLELTLDVRSDAAALPPPALIRRACQAALRRDVKQAQISIVIVDA
CCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEC
AEGRQLNNDYRGKDYATNVLSFALNEGEPVEGLPLFGDLVLCAPVVEQEAAEQNKALMAH
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YAHLLVHGMLHLQGFDHEEDAEAEAMEVLETVIVKQLGYPDPYHEEHI
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782