Click here to switch to the map view.

The map label for this gene is cviR [C]

Identifier: 34499545

GI number: 34499545

Start: 4426249

End: 4427046

Strand: Direct

Name: cviR [C]

Synonym: CV_4090

Alternate gene names: 34499545

Gene position: 4426249-4427046 (Clockwise)

Preceding gene: 34499544

Following gene: 34499547

Centisome position: 93.16

GC content: 58.65

Gene sequence:

>798_bases
ATGGTGACTTCAAAACCCATCAATGCAAGACCGCTCCCGGCCGGCCTCACCGCGTCGCAGCAATGGACATTGCTGGAGTG
GATTCACATGGCCGGGCATATCGAAACCGAGGGCGAGCTCAAGGCCTTCCTTGACAACATCCTGAGCCAGGCCCCGTCCG
ACCGCATCATTCTGGTATTGGGACGCCTGAACAACCAGAATCAGATCCAGAGAATGGAGAAGGTTCTGAACGTCAGCTAC
CCATCCGACTGGCTCAACCAGTACTCCCAGGAAAACTTCGCCCAGCACGATCCCATCATGCGCATCCACCTGGGCCAGGG
ACCGGTCATCTGGGAAGAGCGCTTCAGCCGCGCCAAAGGCTCGGAGGAAAAGCGCTTCATCGCGGAAGCCTCCAGCAACG
GCATGGGCAGCGGCATCACGTTCAGCGCGGCCTCCGACCGCAACAACGTCGGCAGCATCCTGTCCATCGGCGGAAAGGAA
CCCGGACGCAACGCGGCCTTGGTCGCCATGCTGAACTGCCTGACGCCCCATCTGCATCAGGCAGCGGTCCGGATCGCCAA
CCTGCCGCCGGCATCGCCCAGCAATATGCCGCTATCGCAACGCGAATACGACATTTTCCATTGGATGAGCCGCGGCAAGA
CCAACTGGGAAATCGCCACCATCCTCAACATCAGCGAGAGAACGGTGAAGTTTCACGTCGCCAATGTGATCCGCAAGCTC
AATGCGAATAATCGTACTCATGCCATAGTGCTTGGCATGCACTTGGCGATGACACCCCGCGAGTTAGTGAACGGATAA

Upstream 100 bases:

>100_bases
CAACAATTCATATGAATTCAAATCCGCAGGGTCTTACATGCAACAAGCATGTGGGGCACTATCTGCGACACACAGAACCA
AGAACAAGGAAGACCCGCTC

Downstream 100 bases:

>100_bases
GCTCGGTTTTCGCCTGCCTCCAGTCCAGCAAGCCCGTCATCGACATCACCCCGCCATCCAGTGGGCGGGGTATGCCTACC
GGCACGATGGGGAAGCCCAT

Product: LuxR/UhpA family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MVTSKPINARPLPAGLTASQQWTLLEWIHMAGHIETEGELKAFLDNILSQAPSDRIILVLGRLNNQNQIQRMEKVLNVSY
PSDWLNQYSQENFAQHDPIMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRNNVGSILSIGGKE
PGRNAALVAMLNCLTPHLHQAAVRIANLPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKL
NANNRTHAIVLGMHLAMTPRELVNG

Sequences:

>Translated_265_residues
MVTSKPINARPLPAGLTASQQWTLLEWIHMAGHIETEGELKAFLDNILSQAPSDRIILVLGRLNNQNQIQRMEKVLNVSY
PSDWLNQYSQENFAQHDPIMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRNNVGSILSIGGKE
PGRNAALVAMLNCLTPHLHQAAVRIANLPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKL
NANNRTHAIVLGMHLAMTPRELVNG
>Mature_265_residues
MVTSKPINARPLPAGLTASQQWTLLEWIHMAGHIETEGELKAFLDNILSQAPSDRIILVLGRLNNQNQIQRMEKVLNVSY
PSDWLNQYSQENFAQHDPIMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRNNVGSILSIGGKE
PGRNAALVAMLNCLTPHLHQAAVRIANLPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKL
NANNRTHAIVLGMHLAMTPRELVNG

Specific function: Activates Cell Division By Specifically Increasing Transcription From One Of The Two Promoters That Lie Immediately Upstream Of The Ftsqaz Gene Cluster. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=175, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788521, Length=57, Percent_Identity=45.6140350877193, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 29525; Mature: 29525

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTSKPINARPLPAGLTASQQWTLLEWIHMAGHIETEGELKAFLDNILSQAPSDRIILVL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
GRLNNQNQIQRMEKVLNVSYPSDWLNQYSQENFAQHDPIMRIHLGQGPVIWEERFSRAKG
ECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCC
SEEKRFIAEASSNGMGSGITFSAASDRNNVGSILSIGGKEPGRNAALVAMLNCLTPHLHQ
CCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCHHHHH
AAVRIANLPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKL
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHH
NANNRTHAIVLGMHLAMTPRELVNG
CCCCCEEEEEEEEEHHCCHHHHHCC
>Mature Secondary Structure
MVTSKPINARPLPAGLTASQQWTLLEWIHMAGHIETEGELKAFLDNILSQAPSDRIILVL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
GRLNNQNQIQRMEKVLNVSYPSDWLNQYSQENFAQHDPIMRIHLGQGPVIWEERFSRAKG
ECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCC
SEEKRFIAEASSNGMGSGITFSAASDRNNVGSILSIGGKEPGRNAALVAMLNCLTPHLHQ
CCHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCHHHHH
AAVRIANLPPASPSNMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKL
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHH
NANNRTHAIVLGMHLAMTPRELVNG
CCCCCEEEEEEEEEHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]