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The map label for this gene is 34499524

Identifier: 34499524

GI number: 34499524

Start: 4401196

End: 4401966

Strand: Reverse

Name: 34499524

Synonym: CV_4069

Alternate gene names: NA

Gene position: 4401966-4401196 (Counterclockwise)

Preceding gene: 34499525

Following gene: 34499522

Centisome position: 92.65

GC content: 64.46

Gene sequence:

>771_bases
TTGTCATTTTTTCAGGCGAGGCTTGGGATGAGTAATGAGAACGGAATGGCCCCTGGCCAGATCGTGAAGGTTCTGGTCAG
CATCGTTGTCTTTCTTGTCGTGGCGATTTGGCTGCTGGCCAAGCTCGCTACCAGTGGTTTCAACGTGGATGCCGAGGTGA
TGACCAAGGAGGCCGTGGCCGCTCGCCTGAAGCCGGTCGGCGAATCCAAGGCCAGCGACGCGCCGCCGGGAATGCGCACC
GGCGAACAGGTCTACAAGGGCATCTGCATGTCCTGTCACGCCACCGGCCTGGCCGGCTCTCCCAAGTTCGGCGACGCCGG
CGCCTGGGGGCCGCGCATCGCCAAGGGCTGGGACATGCTGGTCAATCATGCGCTCCATGGTTTCAACGCGATGCCGGCCA
AGGGCGGCGCGACCGACCTGAGCGATGACGAAGTGAAGCGCGCCGTCGCCTATATGGGCAATGCCGGCGGCGCCAAGTTC
ACCGAGCCGCCGGTGGGCGGCGCGGCCGGCGCTGCGGCGGCCGCCGATCCGGCCGTGGTGGGCAAGAAGATTTACGACAG
CGTGTGCGTGGCTTGCCACGGCGCGGGCGTCGCCGGGGCGCCGAAGTTCGGCGACAAGGCTGCCTGGGCCGCGCGTCTGA
AGCCGGGCATGGATGAAGTGGTGAAAATCGCCACCAAGGGCCTGAACGCGATGCCGCCGAAGGGCGGCTATACCGGCAGC
GATGCGGAATTCCGCTCGGCTATCGAATACATGGTCAATAATTCAAAATAA

Upstream 100 bases:

>100_bases
GAGATCAAGTGGATGCATCATACAGCAAACATCTAATCCGAGTCCAGAGTATGGTTTTTTGCCTTGTGAACTTGCATACC
GTATAATTAACCAGTTTTAA

Downstream 100 bases:

>100_bases
GCAGCGCTTGATGTAAAAAAAGCACCCAATCGGCATTGGGTGCTTTTTTAATGCATTTGGGGTAATGTGGAATGTCAATG
TTTATGACTTGATAAAAAGG

Product: cytochrome c5

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSFFQARLGMSNENGMAPGQIVKVLVSIVVFLVVAIWLLAKLATSGFNVDAEVMTKEAVAARLKPVGESKASDAPPGMRT
GEQVYKGICMSCHATGLAGSPKFGDAGAWGPRIAKGWDMLVNHALHGFNAMPAKGGATDLSDDEVKRAVAYMGNAGGAKF
TEPPVGGAAGAAAAADPAVVGKKIYDSVCVACHGAGVAGAPKFGDKAAWAARLKPGMDEVVKIATKGLNAMPPKGGYTGS
DAEFRSAIEYMVNNSK

Sequences:

>Translated_256_residues
MSFFQARLGMSNENGMAPGQIVKVLVSIVVFLVVAIWLLAKLATSGFNVDAEVMTKEAVAARLKPVGESKASDAPPGMRT
GEQVYKGICMSCHATGLAGSPKFGDAGAWGPRIAKGWDMLVNHALHGFNAMPAKGGATDLSDDEVKRAVAYMGNAGGAKF
TEPPVGGAAGAAAAADPAVVGKKIYDSVCVACHGAGVAGAPKFGDKAAWAARLKPGMDEVVKIATKGLNAMPPKGGYTGS
DAEFRSAIEYMVNNSK
>Mature_255_residues
SFFQARLGMSNENGMAPGQIVKVLVSIVVFLVVAIWLLAKLATSGFNVDAEVMTKEAVAARLKPVGESKASDAPPGMRTG
EQVYKGICMSCHATGLAGSPKFGDAGAWGPRIAKGWDMLVNHALHGFNAMPAKGGATDLSDDEVKRAVAYMGNAGGAKFT
EPPVGGAAGAAAAADPAVVGKKIYDSVCVACHGAGVAGAPKFGDKAAWAARLKPGMDEVVKIATKGLNAMPPKGGYTGSD
AEFRSAIEYMVNNSK

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 26245; Mature: 26114

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS51007 CYTC ; PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFFQARLGMSNENGMAPGQIVKVLVSIVVFLVVAIWLLAKLATSGFNVDAEVMTKEAVA
CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ARLKPVGESKASDAPPGMRTGEQVYKGICMSCHATGLAGSPKFGDAGAWGPRIAKGWDML
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
VNHALHGFNAMPAKGGATDLSDDEVKRAVAYMGNAGGAKFTEPPVGGAAGAAAAADPAVV
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHH
GKKIYDSVCVACHGAGVAGAPKFGDKAAWAARLKPGMDEVVKIATKGLNAMPPKGGYTGS
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC
DAEFRSAIEYMVNNSK
CHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SFFQARLGMSNENGMAPGQIVKVLVSIVVFLVVAIWLLAKLATSGFNVDAEVMTKEAVA
CHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ARLKPVGESKASDAPPGMRTGEQVYKGICMSCHATGLAGSPKFGDAGAWGPRIAKGWDML
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
VNHALHGFNAMPAKGGATDLSDDEVKRAVAYMGNAGGAKFTEPPVGGAAGAAAAADPAVV
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCHHHH
GKKIYDSVCVACHGAGVAGAPKFGDKAAWAARLKPGMDEVVKIATKGLNAMPPKGGYTGS
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC
DAEFRSAIEYMVNNSK
CHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]