| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499428
Identifier: 34499428
GI number: 34499428
Start: 4296545
End: 4297087
Strand: Reverse
Name: 34499428
Synonym: CV_3973
Alternate gene names: NA
Gene position: 4297087-4296545 (Counterclockwise)
Preceding gene: 34499429
Following gene: 34499427
Centisome position: 90.44
GC content: 57.27
Gene sequence:
>543_bases ATGAGCTGGCGGCGCTTGCTCTGGGGAGGCGCGTTGATCGGTCTGGCGGGCTGTCAGGGCATGGGCGAGCCCAAGATGAT GGGTGGCTCGGGACGGGTGATCAATACCGATAATCGAACCAGCATTGTTTGGGCGAAATTCAATGGTCAGGGTATCGCCG GCAGCGGCGGCGATGATTGCTGTATCGAGTATCCCGCCAAATGGCAGCCGGGAATGACGGCGACAGTCGAGTGGATGAAA GATCCGCAGCGCTGGGGCAATCCGGATGGCTCTAAACGGCCAGCCAGTAATCAGGAAGCGATCAATCGCTGGGACAAGAT TCATGAGTCCCGCTACACCCGGCATACTGCCATCGTATCGGTGCCGAAATATGATGGGACTTGCGGCGTGACGTTGATCA TCCTGCCCTGTGACGAGGCAAGGGTGATTATTGATTGCCAGCAACATTTCGATGTAGTTCAGACCTTGCCAAGTGGCCCA GGACGCTATCCGGAATTGATCCGCCGTTTAGGCGGCAAGACGCAATGCGTTGCCGGCGTTTGA
Upstream 100 bases:
>100_bases TGCGCCGCTTGGCGCAGGCCCATCAGGCGGCGGACAAGGCCAAGTTGTGGTCCGAGGCGGAGCGGATCCCGGTAGTGGAG CGCATGCTCAGGGAAAACGC
Downstream 100 bases:
>100_bases GACGCAAGCCAATGATTGAATGAAATATGAATAAGGGGAATAGGTATGTGGCGTAAATGGTGGATGTTGCCGCTGCTGGC GGTGTTGGCGGCTTGCCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MSWRRLLWGGALIGLAGCQGMGEPKMMGGSGRVINTDNRTSIVWAKFNGQGIAGSGGDDCCIEYPAKWQPGMTATVEWMK DPQRWGNPDGSKRPASNQEAINRWDKIHESRYTRHTAIVSVPKYDGTCGVTLIILPCDEARVIIDCQQHFDVVQTLPSGP GRYPELIRRLGGKTQCVAGV
Sequences:
>Translated_180_residues MSWRRLLWGGALIGLAGCQGMGEPKMMGGSGRVINTDNRTSIVWAKFNGQGIAGSGGDDCCIEYPAKWQPGMTATVEWMK DPQRWGNPDGSKRPASNQEAINRWDKIHESRYTRHTAIVSVPKYDGTCGVTLIILPCDEARVIIDCQQHFDVVQTLPSGP GRYPELIRRLGGKTQCVAGV >Mature_179_residues SWRRLLWGGALIGLAGCQGMGEPKMMGGSGRVINTDNRTSIVWAKFNGQGIAGSGGDDCCIEYPAKWQPGMTATVEWMKD PQRWGNPDGSKRPASNQEAINRWDKIHESRYTRHTAIVSVPKYDGTCGVTLIILPCDEARVIIDCQQHFDVVQTLPSGPG RYPELIRRLGGKTQCVAGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19732; Mature: 19601
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWRRLLWGGALIGLAGCQGMGEPKMMGGSGRVINTDNRTSIVWAKFNGQGIAGSGGDDC CCCHHHHHCCHHHHHHCCCCCCCCCEECCCCCEEECCCCCEEEEEEECCCEECCCCCCCE CIEYPAKWQPGMTATVEWMKDPQRWGNPDGSKRPASNQEAINRWDKIHESRYTRHTAIVS EEECCCCCCCCCEEEHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEE VPKYDGTCGVTLIILPCDEARVIIDCQQHFDVVQTLPSGPGRYPELIRRLGGKTQCVAGV ECCCCCCCCEEEEEEECCCCEEEEECHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCC >Mature Secondary Structure SWRRLLWGGALIGLAGCQGMGEPKMMGGSGRVINTDNRTSIVWAKFNGQGIAGSGGDDC CCHHHHHCCHHHHHHCCCCCCCCCEECCCCCEEECCCCCEEEEEEECCCEECCCCCCCE CIEYPAKWQPGMTATVEWMKDPQRWGNPDGSKRPASNQEAINRWDKIHESRYTRHTAIVS EEECCCCCCCCCEEEHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEE VPKYDGTCGVTLIILPCDEARVIIDCQQHFDVVQTLPSGPGRYPELIRRLGGKTQCVAGV ECCCCCCCCEEEEEEECCCCEEEEECHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA