| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is hetM [H]
Identifier: 34499408
GI number: 34499408
Start: 4273307
End: 4274488
Strand: Reverse
Name: hetM [H]
Synonym: CV_3953
Alternate gene names: 34499408
Gene position: 4274488-4273307 (Counterclockwise)
Preceding gene: 34499409
Following gene: 34499407
Centisome position: 89.97
GC content: 70.64
Gene sequence:
>1182_bases ATGAGTTTTGTCGCTCAGGAAATGCAGGGAACGGTATTGCTGACCGGCGTCACCGGCGGGCTGGGAGGGGAGTTGCTGCC CAGGCTGCTGCGGCGCCACCCGGCTTGCCAGGTTGCGGCGCTGGTGCGCGGCGATGCGCCGGGGCAGGCGGCCGGCAGGC TGGCCGAGGCGATGGATTACGGCCGCTTGTCGCCCGCGGAACGGGCCAGGGTGTCGCTCTGCCACGGCGACGTCTCGCAG CCCCGTTTCGGCCTGGCCGAACCGGCCTGGCGCGAGCTGGCGGCGCGCACCCGGCGGGTGTTCCACCTGGCGGCCAGCGT CGATTTCGACCTGCCGCTGGAAGCGTCGCGGGCGGCCAATGTCGACAGCACCCGCGCGGTGCTGGCGTTCGCCGCGGAGG CGATGCGCGCCGGCGGCGATTTCCGGCTCAACTACGTGTCCACCGCCTACGTGTCCGGACGGCGCGGCGGCCGGCTGGGC GAGGAGGAGCTCGATCAGGGGCAGGCCTTCTGCAATGGCTATGAACAGTCCAAGTTCGAGGCGGAGCAACTGGTCTGGCA GGCGAGCGGCCGGCTGCCGCTGACCGTCTACCGGCCCAGCCAGATCATCGGCGAGTCGCGCGCCGGGCGCATACGCAAGT TCTTCGGCTACTACGAATTCCTCAAGCTGGCCGAGCGCGGCCGCATGCCGGTGCTGCCGGCCAACGCCAAAGCCCGGCCC GATCTGGTGCCGGCGGACTATGTATGCGAGGCGATGCTGCACCTGGATGCGGCGTCCCATACCATCGGGCGTTGCTATCA CCTGACCGCCGGCCTGGCCAACAGTCCGGATTTCGAGCGCATTTTCGGCCTGATGTACCAGGAGCTGGCCGCGCGGCGGC CGGATGGCGGCGCGCCGGCCCGGCCACGGATGTTCCGTCCGGAGGAACTGGAAGCGATGGCGTCGCCGGAGGAGCTGCGC CGTTTCCACCTGAGCCCGCTGAAGCTGCTGTTGCGGACCTACCGCGCCTATCTGGACGAGGAGCGCGACTTCGATTGCGC GGCCACGCAGGCGGAACTGGCCGCCGTCGGCATTCCGTTGCCGGATGTCGAGGCCGCGCTGCGGCTGAGCACCCGTTACG CGCTGGACGCCCGTTTCGGCCAGCCGGCGCGCGGCCGCGCGCTTGAGCGGCAACCGGCCTGA
Upstream 100 bases:
>100_bases GCTTCTCCGCCTTCGTCGACTACGTGATCCACCGCAATCGCTGAATGGAACCGCCCGCCAAAGGCGGGCATCGGCTTCGG CTGCGCAAAGGTGATGGCAA
Downstream 100 bases:
>100_bases TCATTGCAACCTAGCTGGAGCAGACAACGATGAAACGCGAATTGCTGGCCATTCTCCGCTGTCCCCATTGCCGCGGTGAA TTGCACGTGGCCGGAAGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MSFVAQEMQGTVLLTGVTGGLGGELLPRLLRRHPACQVAALVRGDAPGQAAGRLAEAMDYGRLSPAERARVSLCHGDVSQ PRFGLAEPAWRELAARTRRVFHLAASVDFDLPLEASRAANVDSTRAVLAFAAEAMRAGGDFRLNYVSTAYVSGRRGGRLG EEELDQGQAFCNGYEQSKFEAEQLVWQASGRLPLTVYRPSQIIGESRAGRIRKFFGYYEFLKLAERGRMPVLPANAKARP DLVPADYVCEAMLHLDAASHTIGRCYHLTAGLANSPDFERIFGLMYQELAARRPDGGAPARPRMFRPEELEAMASPEELR RFHLSPLKLLLRTYRAYLDEERDFDCAATQAELAAVGIPLPDVEAALRLSTRYALDARFGQPARGRALERQPA
Sequences:
>Translated_393_residues MSFVAQEMQGTVLLTGVTGGLGGELLPRLLRRHPACQVAALVRGDAPGQAAGRLAEAMDYGRLSPAERARVSLCHGDVSQ PRFGLAEPAWRELAARTRRVFHLAASVDFDLPLEASRAANVDSTRAVLAFAAEAMRAGGDFRLNYVSTAYVSGRRGGRLG EEELDQGQAFCNGYEQSKFEAEQLVWQASGRLPLTVYRPSQIIGESRAGRIRKFFGYYEFLKLAERGRMPVLPANAKARP DLVPADYVCEAMLHLDAASHTIGRCYHLTAGLANSPDFERIFGLMYQELAARRPDGGAPARPRMFRPEELEAMASPEELR RFHLSPLKLLLRTYRAYLDEERDFDCAATQAELAAVGIPLPDVEAALRLSTRYALDARFGQPARGRALERQPA >Mature_392_residues SFVAQEMQGTVLLTGVTGGLGGELLPRLLRRHPACQVAALVRGDAPGQAAGRLAEAMDYGRLSPAERARVSLCHGDVSQP RFGLAEPAWRELAARTRRVFHLAASVDFDLPLEASRAANVDSTRAVLAFAAEAMRAGGDFRLNYVSTAYVSGRRGGRLGE EELDQGQAFCNGYEQSKFEAEQLVWQASGRLPLTVYRPSQIIGESRAGRIRKFFGYYEFLKLAERGRMPVLPANAKARPD LVPADYVCEAMLHLDAASHTIGRCYHLTAGLANSPDFERIFGLMYQELAARRPDGGAPARPRMFRPEELEAMASPEELRR FHLSPLKLLLRTYRAYLDEERDFDCAATQAELAAVGIPLPDVEAALRLSTRYALDARFGQPARGRALERQPA
Specific function: Unknown
COG id: COG3320
COG function: function code Q; Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 acyl carrier domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6319591, Length=259, Percent_Identity=29.7297297297297, Blast_Score=80, Evalue=6e-16, Organism=Drosophila melanogaster, GI28572029, Length=306, Percent_Identity=25.8169934640523, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI281363511, Length=286, Percent_Identity=26.2237762237762, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI281363509, Length=286, Percent_Identity=26.2237762237762, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24654209, Length=286, Percent_Identity=26.2237762237762, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI221330327, Length=281, Percent_Identity=25.2669039145907, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009081 - InterPro: IPR013120 - InterPro: IPR016040 - InterPro: IPR006163 - InterPro: IPR010080 [H]
Pfam domain/function: PF07993 NAD_binding_4; PF00550 PP-binding [H]
EC number: NA
Molecular weight: Translated: 43276; Mature: 43145
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFVAQEMQGTVLLTGVTGGLGGELLPRLLRRHPACQVAALVRGDAPGQAAGRLAEAMDY CCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHC GRLSPAERARVSLCHGDVSQPRFGLAEPAWRELAARTRRVFHLAASVDFDLPLEASRAAN CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC VDSTRAVLAFAAEAMRAGGDFRLNYVSTAYVSGRRGGRLGEEELDQGQAFCNGYEQSKFE CCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHH AEQLVWQASGRLPLTVYRPSQIIGESRAGRIRKFFGYYEFLKLAERGRMPVLPANAKARP HHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC DLVPADYVCEAMLHLDAASHTIGRCYHLTAGLANSPDFERIFGLMYQELAARRPDGGAPA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC RPRMFRPEELEAMASPEELRRFHLSPLKLLLRTYRAYLDEERDFDCAATQAELAAVGIPL CCCCCCHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC PDVEAALRLSTRYALDARFGQPARGRALERQPA CCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure SFVAQEMQGTVLLTGVTGGLGGELLPRLLRRHPACQVAALVRGDAPGQAAGRLAEAMDY CCCHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHC GRLSPAERARVSLCHGDVSQPRFGLAEPAWRELAARTRRVFHLAASVDFDLPLEASRAAN CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC VDSTRAVLAFAAEAMRAGGDFRLNYVSTAYVSGRRGGRLGEEELDQGQAFCNGYEQSKFE CCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHH AEQLVWQASGRLPLTVYRPSQIIGESRAGRIRKFFGYYEFLKLAERGRMPVLPANAKARP HHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC DLVPADYVCEAMLHLDAASHTIGRCYHLTAGLANSPDFERIFGLMYQELAARRPDGGAPA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC RPRMFRPEELEAMASPEELRRFHLSPLKLLLRTYRAYLDEERDFDCAATQAELAAVGIPL CCCCCCHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC PDVEAALRLSTRYALDARFGQPARGRALERQPA CCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8157596; 11759840 [H]