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The map label for this gene is yagI [H]

Identifier: 34499374

GI number: 34499374

Start: 4232527

End: 4233297

Strand: Direct

Name: yagI [H]

Synonym: CV_3919

Alternate gene names: 34499374

Gene position: 4232527-4233297 (Clockwise)

Preceding gene: 34499366

Following gene: 34499377

Centisome position: 89.09

GC content: 73.28

Gene sequence:

>771_bases
ATGCAACAGCAAGAAGACCGCCAGTTCGTCACCGCGCTGGCGCGCGGCCTGGAAGTGCTGGCGGCGTTCCGCCCCGGCGA
GGGCGCGCTGTCCAACCAGGAACTGGCGCGCCGCACCGGGCTGCCCAAGTCCACGGTGTCGCGGCTGAGCTATACCTTGA
CCCGGCTCGGCTATCTGCAACAGGAAGGGGAAAACGGCCAGTACCGGCTGGGGCTGGCGCTGCTGGCGCTGGGCGCGGCG
GCGCTGGCCGGCTACGACGCGCGGGCGGCGGCGGCGCCGCTGATGCGCGAGTTCGCGCTGGCCAACAATGTGTCGGTCAG
CCTGGCGCTGCGCGACGGCAGCGACATGGTGTATCTGGAAACCTGCCGCAGCCAGGCGCGGGTGTCGGTGCAGCTGTCCA
CCGGCTCGCGGGTGCCGCTGGCCACCACCGCCATCGGCCGCGCCTATTTCGCCGGCCTGCCGCAAGCCGAGCGCGACGCG
CTGCTGCCGCTGTTGGCCGAACGCTACGGCGGCGACTGGCCGGCGCTGCGCGACCGGCTGCTGCGCGCCTCGGCCGACTA
CGGCGTCCATGGCTACACCGCGTCCTTCGGCGAATACGAGCCCGACGTGATGGCGGTGGGCATCCACCTGCCGGCGCTCT
TGCCCGGCCAGCCGGCGATGGCGCTCAACGCCAGCGGGCCGGCCTTCGCCTTCGACGAGGCGGCGATGCGCGAACGCGTG
GCGCCGGCGCTGAAGGCGCTGCGCCAGCGCATCGCGCCGACGCCGGGCTGA

Upstream 100 bases:

>100_bases
ATTAGATTTCACCATGCAGAATAGACTAAACACTCTGCCGCGCGCTTGTAAAGCGATTTACCTGTCATGCGGCAATTTCT
TTGTCGCAATGGGGAACAAG

Downstream 100 bases:

>100_bases
GCGCGCCAACGACGACGGCCCGCGCAAGGCGGGCCGTTGGCGGAACTGCTTAATGTGGAGTCAGGCCGACTGGATGTAAT
GAACCAGATGGTTGATCACC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MQQQEDRQFVTALARGLEVLAAFRPGEGALSNQELARRTGLPKSTVSRLSYTLTRLGYLQQEGENGQYRLGLALLALGAA
ALAGYDARAAAAPLMREFALANNVSVSLALRDGSDMVYLETCRSQARVSVQLSTGSRVPLATTAIGRAYFAGLPQAERDA
LLPLLAERYGGDWPALRDRLLRASADYGVHGYTASFGEYEPDVMAVGIHLPALLPGQPAMALNASGPAFAFDEAAMRERV
APALKALRQRIAPTPG

Sequences:

>Translated_256_residues
MQQQEDRQFVTALARGLEVLAAFRPGEGALSNQELARRTGLPKSTVSRLSYTLTRLGYLQQEGENGQYRLGLALLALGAA
ALAGYDARAAAAPLMREFALANNVSVSLALRDGSDMVYLETCRSQARVSVQLSTGSRVPLATTAIGRAYFAGLPQAERDA
LLPLLAERYGGDWPALRDRLLRASADYGVHGYTASFGEYEPDVMAVGIHLPALLPGQPAMALNASGPAFAFDEAAMRERV
APALKALRQRIAPTPG
>Mature_256_residues
MQQQEDRQFVTALARGLEVLAAFRPGEGALSNQELARRTGLPKSTVSRLSYTLTRLGYLQQEGENGQYRLGLALLALGAA
ALAGYDARAAAAPLMREFALANNVSVSLALRDGSDMVYLETCRSQARVSVQLSTGSRVPLATTAIGRAYFAGLPQAERDA
LLPLLAERYGGDWPALRDRLLRASADYGVHGYTASFGEYEPDVMAVGIHLPALLPGQPAMALNASGPAFAFDEAAMRERV
APALKALRQRIAPTPG

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=203, Percent_Identity=30.5418719211823, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788131, Length=129, Percent_Identity=35.6589147286822, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082359, Length=155, Percent_Identity=27.0967741935484, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786715, Length=148, Percent_Identity=30.4054054054054, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI145693096, Length=260, Percent_Identity=28.4615384615385, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 27345; Mature: 27345

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQQEDRQFVTALARGLEVLAAFRPGEGALSNQELARRTGLPKSTVSRLSYTLTRLGYLQ
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QEGENGQYRLGLALLALGAAALAGYDARAAAAPLMREFALANNVSVSLALRDGSDMVYLE
HCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEHH
TCRSQARVSVQLSTGSRVPLATTAIGRAYFAGLPQAERDALLPLLAERYGGDWPALRDRL
HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
LRASADYGVHGYTASFGEYEPDVMAVGIHLPALLPGQPAMALNASGPAFAFDEAAMRERV
HHHCCCCCCCCEECCCCCCCCCEEEEEEECCEECCCCCCEEEECCCCCCHHHHHHHHHHH
APALKALRQRIAPTPG
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQQQEDRQFVTALARGLEVLAAFRPGEGALSNQELARRTGLPKSTVSRLSYTLTRLGYLQ
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QEGENGQYRLGLALLALGAAALAGYDARAAAAPLMREFALANNVSVSLALRDGSDMVYLE
HCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEHH
TCRSQARVSVQLSTGSRVPLATTAIGRAYFAGLPQAERDALLPLLAERYGGDWPALRDRL
HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
LRASADYGVHGYTASFGEYEPDVMAVGIHLPALLPGQPAMALNASGPAFAFDEAAMRERV
HHHCCCCCCCCEECCCCCCCCCEEEEEEECCEECCCCCCEEEECCCCCCHHHHHHHHHHH
APALKALRQRIAPTPG
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]