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The map label for this gene is yqgF [C]

Identifier: 34499365

GI number: 34499365

Start: 4224299

End: 4224712

Strand: Direct

Name: yqgF [C]

Synonym: CV_3910

Alternate gene names: 34499365

Gene position: 4224299-4224712 (Clockwise)

Preceding gene: 34499364

Following gene: 34499366

Centisome position: 88.91

GC content: 68.12

Gene sequence:

>414_bases
TTGGCTTTCGATTTCGGCGAGCGCCGCATCGGCGTCGCCGTCGGCGACACGATTCTCGGCATTCCCCATCCGCTGGCCAC
GATAGACACGGCCGTCACCGACGAGCGCTTCGCCGCCATCGCCAGGCTGATAGAAGAGTGGCAGCCCAGGCAGCTGGTGG
TGGGCCTGCCCATGCATCCGGACGGCGAGGAACATGAGCTGTCCGCGCTGTCGCGCCGCTTCGCCAACCGGCTGAAGGGC
CGTTTCGGCCTGCCGGTATGGCTGGTGGACGAGCGCTACACCTCGGTGATCGCCGAGCAACTGCTGGAAGAGGCCGGCGT
GAAGAAAGGCCGCAAGCAGAAGCCGGCGCTGGACCAGGTGGCCGCCCAGGCCATCCTCGCCGGCTGGTTCGAGCAGCCGG
GCACCGCCGTCTGA

Upstream 100 bases:

>100_bases
GACCTGCCGTACGAAGAGCGCTACGACGCCGCGATGGCGCTGCTTGGCTTCGATCCCTCCCTGCTGTCGTCGGATGTCGG
CCATGCCTGAAGGTTGCGCA

Downstream 100 bases:

>100_bases
TGCCGGCCAAACTGTTCGCCTTGCTGCTGATCGCCGTCAGCGTCGCCGGCTTCTGCTGGCTGTGGCGCCAGGCGCAGCTG
GCCAATGCCGCGCAGGACTG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MAFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHPDGEEHELSALSRRFANRLKG
RFGLPVWLVDERYTSVIAEQLLEEAGVKKGRKQKPALDQVAAQAILAGWFEQPGTAV

Sequences:

>Translated_137_residues
MAFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHPDGEEHELSALSRRFANRLKG
RFGLPVWLVDERYTSVIAEQLLEEAGVKKGRKQKPALDQVAAQAILAGWFEQPGTAV
>Mature_136_residues
AFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHPDGEEHELSALSRRFANRLKGR
FGLPVWLVDERYTSVIAEQLLEEAGVKKGRKQKPALDQVAAQAILAGWFEQPGTAV

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=45.1127819548872, Blast_Score=108, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CHRVO (Q7NR74)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903580.1
- ProteinModelPortal:   Q7NR74
- SMR:   Q7NR74
- GeneID:   2550607
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3910
- NMPDR:   fig|243365.1.peg.3910
- HOGENOM:   HBG607919
- OMA:   ACVILEQ
- PhylomeDB:   Q7NR74
- ProtClustDB:   PRK00109
- BioCyc:   CVIO243365:CV_3910-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15140; Mature: 15008

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHP
CCCCCCCCEECCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
DGEEHELSALSRRFANRLKGRFGLPVWLVDERYTSVIAEQLLEEAGVKKGRKQKPALDQV
CCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
AAQAILAGWFEQPGTAV
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AFDFGERRIGVAVGDTILGIPHPLATIDTAVTDERFAAIARLIEEWQPRQLVVGLPMHP
CCCCCCCEECCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
DGEEHELSALSRRFANRLKGRFGLPVWLVDERYTSVIAEQLLEEAGVKKGRKQKPALDQV
CCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
AAQAILAGWFEQPGTAV
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782