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The map label for this gene is ypjD [H]

Identifier: 34499287

GI number: 34499287

Start: 4129551

End: 4130372

Strand: Reverse

Name: ypjD [H]

Synonym: CV_3832

Alternate gene names: 34499287

Gene position: 4130372-4129551 (Counterclockwise)

Preceding gene: 34499300

Following gene: 34499286

Centisome position: 86.94

GC content: 63.75

Gene sequence:

>822_bases
ATGACCAGCCTATTGCTCGTTCTGTCCCTGCTTCTCATCCTCTCCTACGGGGCCTTCACCTGGCATTACCTGGCCAACTG
GAAAGGCTCGGCCCGCTGGCCGCGCAACCCGCGGCTAGAGCACAGCCTGCTCGGCCTGCTGCTGCTGGTGCAGGCTTTCG
TGGTGGTGGTGCCGCTGAGCGCCAGCGGAGGCCTGTCGCTAGGAGTCGGCCACGCGCTGAGCGTGATGGTGTGGATCATG
TTGCTGATCTACTGGACCTGCAGCTTCTTCTATAAGGTGGAGGGCCTGCAGCTGTTCATGATGCCGCTGGCGATGGCCGC
GCTGGCCTTCGCCATCGCCTTCCCGGGCCGGCACATGGTCAGCGACTTGTCCAACCCGGCTTTCGTGCTGCACATCCTGG
TGTCGATGCTGGCTTACAGCCTGTTCGCGATCGGCGCGCTGATCGCGGTGCTGATGCTGATCCTGGAGCGGGCGTTGCAC
CACCGGCGGGTGTCGATGCTGGCCAGGCAGCTGCCGCCGCTGCTGACGCTGGAAAAAATGATGTTCCAGGTGATCGCCGT
CGGCTTCCTGCTGTTGACGCTGACGCTGCTGACTGGCGTGCTGTTTTCCGAGGAAGTGTTCGGCCAGGCCGCCGCGCTGA
CGCACAAGACGGTGTTCGGCGTGATTTCGTGGCTGATCTTCGCCGGCCTGCTGCTCGGCCGCCGGCTCAAGGGCTGGCGC
GGCAAGGTGGCGATACGCTGGGCGCTGGCGGGTTTCCTGTCATTGATGCTGGCATACGTGGGCAGCAAGGTGGTCTTAGA
ATTGATCCTGCAGCGCGGATGA

Upstream 100 bases:

>100_bases
TACTCTCTGCCAACGAGCGGCAGCTTGGTGTAGACTCTCAAATCCGTCGATTTTACCACGAGCCGCCCGGGCCGCGCCCG
GATTTGATCACATACCCGAT

Downstream 100 bases:

>100_bases
GTCCGCTCGTCTGTCGCTGACGCATACCCATTCGCTTTCACGACTGCACTTTCACTTAGGAGTTAGCCATGAAGAAGCTG
TTCGCCGTATTCGCCGCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTSLLLVLSLLLILSYGAFTWHYLANWKGSARWPRNPRLEHSLLGLLLLVQAFVVVVPLSASGGLSLGVGHALSVMVWIM
LLIYWTCSFFYKVEGLQLFMMPLAMAALAFAIAFPGRHMVSDLSNPAFVLHILVSMLAYSLFAIGALIAVLMLILERALH
HRRVSMLARQLPPLLTLEKMMFQVIAVGFLLLTLTLLTGVLFSEEVFGQAAALTHKTVFGVISWLIFAGLLLGRRLKGWR
GKVAIRWALAGFLSLMLAYVGSKVVLELILQRG

Sequences:

>Translated_273_residues
MTSLLLVLSLLLILSYGAFTWHYLANWKGSARWPRNPRLEHSLLGLLLLVQAFVVVVPLSASGGLSLGVGHALSVMVWIM
LLIYWTCSFFYKVEGLQLFMMPLAMAALAFAIAFPGRHMVSDLSNPAFVLHILVSMLAYSLFAIGALIAVLMLILERALH
HRRVSMLARQLPPLLTLEKMMFQVIAVGFLLLTLTLLTGVLFSEEVFGQAAALTHKTVFGVISWLIFAGLLLGRRLKGWR
GKVAIRWALAGFLSLMLAYVGSKVVLELILQRG
>Mature_272_residues
TSLLLVLSLLLILSYGAFTWHYLANWKGSARWPRNPRLEHSLLGLLLLVQAFVVVVPLSASGGLSLGVGHALSVMVWIML
LIYWTCSFFYKVEGLQLFMMPLAMAALAFAIAFPGRHMVSDLSNPAFVLHILVSMLAYSLFAIGALIAVLMLILERALHH
RRVSMLARQLPPLLTLEKMMFQVIAVGFLLLTLTLLTGVLFSEEVFGQAAALTHKTVFGVISWLIFAGLLLGRRLKGWRG
KVAIRWALAGFLSLMLAYVGSKVVLELILQRG

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=166, Percent_Identity=31.3253012048193, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30187; Mature: 30056

Theoretical pI: Translated: 11.00; Mature: 11.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSLLLVLSLLLILSYGAFTWHYLANWKGSARWPRNPRLEHSLLGLLLLVQAFVVVVPLS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
ASGGLSLGVGHALSVMVWIMLLIYWTCSFFYKVEGLQLFMMPLAMAALAFAIAFPGRHMV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
SDLSNPAFVLHILVSMLAYSLFAIGALIAVLMLILERALHHRRVSMLARQLPPLLTLEKM
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
MFQVIAVGFLLLTLTLLTGVLFSEEVFGQAAALTHKTVFGVISWLIFAGLLLGRRLKGWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GKVAIRWALAGFLSLMLAYVGSKVVLELILQRG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]