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The map label for this gene is rimM

Identifier: 34499129

GI number: 34499129

Start: 3974694

End: 3975203

Strand: Reverse

Name: rimM

Synonym: CV_3674

Alternate gene names: 34499129

Gene position: 3975203-3974694 (Counterclockwise)

Preceding gene: 34499130

Following gene: 34499128

Centisome position: 83.67

GC content: 64.31

Gene sequence:

>510_bases
ATGCGCGACGAAGATCTCGTAGTAATGGGCTTTGTGCGCGGCGCCTTCGGTATCAAGGGCTGGGTGAAGATCCACGCCGA
TACCGAATACGCTGACGGCCTGTTCGATTACCCGACCTGGTGGTTGGGCAAGAACGGCAGCTGGAAGCCGTATGCATTTG
AGAACGGCGCTGTCCAGCCCAAGGCCCTGGCGGCCAAGCTGGAGGGCGTCGACGACCGCGACGCGGCGGAGGCTCTCCGC
GGCACGCAGATCGCCATTCCGCGCAGCGAGCTGCCGGAAGCCGGCGACGGCGAATACTACTGGGCCGATCTGATCGGCCT
GAGCGTCGTCAACCAGCAGGGCGAGACGCTCGGCAAGGTGGACAGCCTGCTCGAAACCGGCGCCAACGACGTGCTGGTGG
TCAAGGGCGGCGACGGCCAGCAGCGCCTGATCCCCTTTGTGGATCAATACGTGCTGGAAGTGGTGCCGGCCGAAGGTCGC
ATCCTGGTGGACTGGGGTCTGGATTACTGA

Upstream 100 bases:

>100_bases
GTTGGCGCCCAGCTGTCCGACTCCGTTGCCAAGCTGCTGAAAGAGCAGAAAGTCGTAGCCGCTTAATCCGGCTATCCGAC
ATCAAGACGGAATTGGGCGC

Downstream 100 bases:

>100_bases
TGCAGATCGACGCGGTGACGCTGTTCCCGGAGATGTTCGATTCGATTGCCCGCTTCGGCGTCAGCCAGCGGGCGCTTGAC
TTGGGCCTCTGGCAGTTCAA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRDEDLVVMGFVRGAFGIKGWVKIHADTEYADGLFDYPTWWLGKNGSWKPYAFENGAVQPKALAAKLEGVDDRDAAEALR
GTQIAIPRSELPEAGDGEYYWADLIGLSVVNQQGETLGKVDSLLETGANDVLVVKGGDGQQRLIPFVDQYVLEVVPAEGR
ILVDWGLDY

Sequences:

>Translated_169_residues
MRDEDLVVMGFVRGAFGIKGWVKIHADTEYADGLFDYPTWWLGKNGSWKPYAFENGAVQPKALAAKLEGVDDRDAAEALR
GTQIAIPRSELPEAGDGEYYWADLIGLSVVNQQGETLGKVDSLLETGANDVLVVKGGDGQQRLIPFVDQYVLEVVPAEGR
ILVDWGLDY
>Mature_169_residues
MRDEDLVVMGFVRGAFGIKGWVKIHADTEYADGLFDYPTWWLGKNGSWKPYAFENGAVQPKALAAKLEGVDDRDAAEALR
GTQIAIPRSELPEAGDGEYYWADLIGLSVVNQQGETLGKVDSLLETGANDVLVVKGGDGQQRLIPFVDQYVLEVVPAEGR
ILVDWGLDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=167, Percent_Identity=40.7185628742515, Blast_Score=134, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_CHRVO (Q7NRV6)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903344.1
- ProteinModelPortal:   Q7NRV6
- SMR:   Q7NRV6
- GeneID:   2549126
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3674
- NMPDR:   fig|243365.1.peg.3674
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   Q7NRV6
- ProtClustDB:   PRK00122
- BioCyc:   CVIO243365:CV_3674-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18546; Mature: 18546

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDEDLVVMGFVRGAFGIKGWVKIHADTEYADGLFDYPTWWLGKNGSWKPYAFENGAVQP
CCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCH
KALAAKLEGVDDRDAAEALRGTQIAIPRSELPEAGDGEYYWADLIGLSVVNQQGETLGKV
HHHHHHHCCCCCCHHHHHHCCCEEECCHHHCCCCCCCCEEEEEHHHHHHHCCCCHHHHHH
DSLLETGANDVLVVKGGDGQQRLIPFVDQYVLEVVPAEGRILVDWGLDY
HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHEECCCCEEEEEECCCC
>Mature Secondary Structure
MRDEDLVVMGFVRGAFGIKGWVKIHADTEYADGLFDYPTWWLGKNGSWKPYAFENGAVQP
CCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCH
KALAAKLEGVDDRDAAEALRGTQIAIPRSELPEAGDGEYYWADLIGLSVVNQQGETLGKV
HHHHHHHCCCCCCHHHHHHCCCEEECCHHHCCCCCCCCEEEEEHHHHHHHCCCCHHHHHH
DSLLETGANDVLVVKGGDGQQRLIPFVDQYVLEVVPAEGRILVDWGLDY
HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHEECCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782