| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is icd [H]
Identifier: 34499119
GI number: 34499119
Start: 3965151
End: 3967388
Strand: Direct
Name: icd [H]
Synonym: CV_3664
Alternate gene names: 34499119
Gene position: 3965151-3967388 (Clockwise)
Preceding gene: 34499117
Following gene: 34499121
Centisome position: 83.46
GC content: 64.21
Gene sequence:
>2238_bases ATGCCAGCAGAACAATCGAAAATCATCTACACCCTCACCGACGAAGCGCCGGCGCTGGCCACCAGTTCCTTCCTGCCCAT CGTGCAGGCGTTCGCAGGTTCCGCCGGCATCCAGGTCGACACTGCAGACATCTCCGTGGCCGCGCGCGTGCTGGCCGAAT TCCCCGACTATCTGACCGACGGGCAGAAGGTTCCGAACACGCTGGCCGAACTCGGCAAGCTGACGCTGCAGCCGGAAGCC AACATCATCAAGCTGCCCAACATCAGCGCCTCGGTGGCCCAGCTGGCCGCCTGCGTCAAGGAGCTGCAGTCCAAGGGCTA CAAGCTGCCCGACTACCCGGAAAACCCGGCCAACGACCAAGAAAAGGCGATCAAGGACCGCTACGCCAAGTGCCTGGGCT CCGCGGTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGGCGGTGAAGAACTACGCGAAGAAGCAC CCGCATTCCATGGGCGAATGGAAGCAGTGGTCGCAGACCCACGTCTCCCACATGCACCACGGCGACTTCTACCACGGCGA GAAGTCGATCACGCTGGACAAGGCCCGCGACGTCAAGATGGAACTGGTGACCAAGAGCGGCCAGACCATCGTGCTGAAGC CGAAAGTCGCGCTGCAGGACGGCGAAATCATCGACTCCATGTTCATGAGCAAGAAGGCGCTGTGCGAGTTCTACGAGCGC GAGATGGAAGACTGCCGCGAGGCCGGCATCCTGTTCTCGCTGCACGTGAAGGCCACCATGATGAAGGTGTCCCACCCCAT CGTGTTCGGCCACTGCGTCAAGATCTACTACAAGGACGCGTTCGAGAAGCACGGCAAGCTGTTCGACGAGCTGGGCGTCA ACGTCAACAACGGCATGGCCACGCTGTACGAGAAGATCGAGACCCTGCCGGCCTCCAAGCGCGAAGAGATCATCCGCGAC CTGCACGCCTGCCAGGAGCACCGTCCGCGCCTGGCGATGGTGGACTCCGCCAAGGGCATCACCAACTTCCACTCGCCGAA CGATGTGATCGTCGACGCTTCGATGCCGGCGATGATCCGCGCCGGCGGCAAGATGTGGGGCGCCGACGGCAAGCCCTACG ACTGCAAGGCGGTGATGCCGGAATCGACCTTCGCCCGCATCTACCAGGAGATGATCAACTTCTGCAAATGGCACGGCAAC TTCGACCCGCGCACCATGGGCACCGTGCCCAACGTCGGCCTGATGGCGCAGAAGGCCGAGGAATACGGCTCGCACGACAA GACTTTTGAAATCCAGGAAGATGGCGTCGCCAACATCGTCGACCTCGCCACCGGCGAAGTGCTGCTGTCGCAGAACGTCG AGCAGGGCGACATCTGGCGCATGTGCCAGGTGAAGGATGCGCCGATCCGCGACTGGGTCAAGCTGGCCGTGACCCGCGCC CGCAACTCCGGCATGCCGGCGGTGTTCTGGCTGGACCCGTACCGCCCGCACGAGAACGAACTGATCAAGAAGGTGCAGAC CTATCTGAAGGATCACGACACCAGCGGCCTGGACATCCACATCATGTCCCAGGTGCGCGCGATGCGCTTCACGCTGGAGC GCGTGGCGAGGGGCCTGGACACCATCTCGGTCACCGGCAACATCCTGCGCGACTACCTGACCGACCTGTTCCCCATCATG GAGCTGGGCACCTCGGCCAAGATGCTGTCCATCGTGCCGCTGATGGCCGGCGGCGGCATGTACGAAACCGGCGCCGGCGG CTCGGCGCCGAAACACGTGCAGCAGCTCTTGGAAGAGAACCACCTGCGCTGGGACAGCCTGGGCGAATTCCTGGCGCTGG CGGTCTCGCTGGAAGACCTGGGCATCAAGACCGGCAACGCCAAGGCCAAGATCCTGGCCAAGACGCTGGATCTGGCCACC GGCAAGCTGCTGGACGAGAACAAGTCCCCGTCGCGCCGCACCGGCGAGCTCGACAACCGCGGCAGCCAGTTCTACCTGTC TCTGTACTGGGCGCAGGCGCTGGCCGAGCAGTCCGAAGACAAGGAACTGCAGGCCCGCTTCGCGCCCGTGGCCAAGCAAC TGGCCGACGGCGAGCAGCAGATCCTGGCCGAGCTGAAGGCTGTGCAGGGCAAGCCGGCCGACATCGGCGGCTACTACCTG CCGGACGCCACCAAGTGCAGCGCGGTGATGCGTCCCAGCGCCACCTTCAACGCCGCCATCGCCGCTGTGCGCGCCTGA
Upstream 100 bases:
>100_bases TGGGCTGCCGCGCGCTCCGGTGTTCCTCGGAACATCGTCCGAGCGATGAACTCTTCGCGCAATCGTTCTGTCGTCACAAG ATCAACATGGAGATAGAGTA
Downstream 100 bases:
>100_bases GGAAGCAGAAACACAGCCCCCGGTTTTCCGGGGGCTTTTTTCTTGCCCGCGCGCGCCCTCCCCTTAACGCCAGTCGCGGG CCAGGGCCCTCGCCGCATCC
Product: isocitrate dehydrogenase (NADP)
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 745; Mature: 744
Protein sequence:
>745_residues MPAEQSKIIYTLTDEAPALATSSFLPIVQAFAGSAGIQVDTADISVAARVLAEFPDYLTDGQKVPNTLAELGKLTLQPEA NIIKLPNISASVAQLAACVKELQSKGYKLPDYPENPANDQEKAIKDRYAKCLGSAVNPVLREGNSDRRAPLAVKNYAKKH PHSMGEWKQWSQTHVSHMHHGDFYHGEKSITLDKARDVKMELVTKSGQTIVLKPKVALQDGEIIDSMFMSKKALCEFYER EMEDCREAGILFSLHVKATMMKVSHPIVFGHCVKIYYKDAFEKHGKLFDELGVNVNNGMATLYEKIETLPASKREEIIRD LHACQEHRPRLAMVDSAKGITNFHSPNDVIVDASMPAMIRAGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGN FDPRTMGTVPNVGLMAQKAEEYGSHDKTFEIQEDGVANIVDLATGEVLLSQNVEQGDIWRMCQVKDAPIRDWVKLAVTRA RNSGMPAVFWLDPYRPHENELIKKVQTYLKDHDTSGLDIHIMSQVRAMRFTLERVARGLDTISVTGNILRDYLTDLFPIM ELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLLEENHLRWDSLGEFLALAVSLEDLGIKTGNAKAKILAKTLDLAT GKLLDENKSPSRRTGELDNRGSQFYLSLYWAQALAEQSEDKELQARFAPVAKQLADGEQQILAELKAVQGKPADIGGYYL PDATKCSAVMRPSATFNAAIAAVRA
Sequences:
>Translated_745_residues MPAEQSKIIYTLTDEAPALATSSFLPIVQAFAGSAGIQVDTADISVAARVLAEFPDYLTDGQKVPNTLAELGKLTLQPEA NIIKLPNISASVAQLAACVKELQSKGYKLPDYPENPANDQEKAIKDRYAKCLGSAVNPVLREGNSDRRAPLAVKNYAKKH PHSMGEWKQWSQTHVSHMHHGDFYHGEKSITLDKARDVKMELVTKSGQTIVLKPKVALQDGEIIDSMFMSKKALCEFYER EMEDCREAGILFSLHVKATMMKVSHPIVFGHCVKIYYKDAFEKHGKLFDELGVNVNNGMATLYEKIETLPASKREEIIRD LHACQEHRPRLAMVDSAKGITNFHSPNDVIVDASMPAMIRAGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGN FDPRTMGTVPNVGLMAQKAEEYGSHDKTFEIQEDGVANIVDLATGEVLLSQNVEQGDIWRMCQVKDAPIRDWVKLAVTRA RNSGMPAVFWLDPYRPHENELIKKVQTYLKDHDTSGLDIHIMSQVRAMRFTLERVARGLDTISVTGNILRDYLTDLFPIM ELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLLEENHLRWDSLGEFLALAVSLEDLGIKTGNAKAKILAKTLDLAT GKLLDENKSPSRRTGELDNRGSQFYLSLYWAQALAEQSEDKELQARFAPVAKQLADGEQQILAELKAVQGKPADIGGYYL PDATKCSAVMRPSATFNAAIAAVRA >Mature_744_residues PAEQSKIIYTLTDEAPALATSSFLPIVQAFAGSAGIQVDTADISVAARVLAEFPDYLTDGQKVPNTLAELGKLTLQPEAN IIKLPNISASVAQLAACVKELQSKGYKLPDYPENPANDQEKAIKDRYAKCLGSAVNPVLREGNSDRRAPLAVKNYAKKHP HSMGEWKQWSQTHVSHMHHGDFYHGEKSITLDKARDVKMELVTKSGQTIVLKPKVALQDGEIIDSMFMSKKALCEFYERE MEDCREAGILFSLHVKATMMKVSHPIVFGHCVKIYYKDAFEKHGKLFDELGVNVNNGMATLYEKIETLPASKREEIIRDL HACQEHRPRLAMVDSAKGITNFHSPNDVIVDASMPAMIRAGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGNF DPRTMGTVPNVGLMAQKAEEYGSHDKTFEIQEDGVANIVDLATGEVLLSQNVEQGDIWRMCQVKDAPIRDWVKLAVTRAR NSGMPAVFWLDPYRPHENELIKKVQTYLKDHDTSGLDIHIMSQVRAMRFTLERVARGLDTISVTGNILRDYLTDLFPIME LGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLLEENHLRWDSLGEFLALAVSLEDLGIKTGNAKAKILAKTLDLATG KLLDENKSPSRRTGELDNRGSQFYLSLYWAQALAEQSEDKELQARFAPVAKQLADGEQQILAELKAVQGKPADIGGYYLP DATKCSAVMRPSATFNAAIAAVRA
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 82427; Mature: 82296
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAEQSKIIYTLTDEAPALATSSFLPIVQAFAGSAGIQVDTADISVAARVLAEFPDYLTD CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCC GQKVPNTLAELGKLTLQPEANIIKLPNISASVAQLAACVKELQSKGYKLPDYPENPANDQ CCCCHHHHHHHHCEEECCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH EKAIKDRYAKCLGSAVNPVLREGNSDRRAPLAVKNYAKKHPHSMGEWKQWSQTHVSHMHH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC GDFYHGEKSITLDKARDVKMELVTKSGQTIVLKPKVALQDGEIIDSMFMSKKALCEFYER CCCCCCCCCEEECCCCCCEEEEEECCCCEEEECCCEECCCCHHHHHHHHHHHHHHHHHHH EMEDCREAGILFSLHVKATMMKVSHPIVFGHCVKIYYKDAFEKHGKLFDELGVNVNNGMA HHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH TLYEKIETLPASKREEIIRDLHACQEHRPRLAMVDSAKGITNFHSPNDVIVDASMPAMIR HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHH AGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGNFDPRTMGTVPNVGLMAQKAE CCCCEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFEIQEDGVANIVDLATGEVLLSQNVEQGDIWRMCQVKDAPIRDWVKLAVTRA HHCCCCCEEEECCCCCHHHHHHHCCHHHHHCCCCCCCCEEHHCCCCCCHHHHHHHHHHHH RNSGMPAVFWLDPYRPHENELIKKVQTYLKDHDTSGLDIHIMSQVRAMRFTLERVARGLD CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCC TISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLLEEN EEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHC HLRWDSLGEFLALAVSLEDLGIKTGNAKAKILAKTLDLATGKLLDENKSPSRRTGELDNR CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC GSQFYLSLYWAQALAEQSEDKELQARFAPVAKQLADGEQQILAELKAVQGKPADIGGYYL CCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEC PDATKCSAVMRPSATFNAAIAAVRA CCCHHHHHHHCCCCHHHHHHHHHCC >Mature Secondary Structure PAEQSKIIYTLTDEAPALATSSFLPIVQAFAGSAGIQVDTADISVAARVLAEFPDYLTD CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCC GQKVPNTLAELGKLTLQPEANIIKLPNISASVAQLAACVKELQSKGYKLPDYPENPANDQ CCCCHHHHHHHHCEEECCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH EKAIKDRYAKCLGSAVNPVLREGNSDRRAPLAVKNYAKKHPHSMGEWKQWSQTHVSHMHH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC GDFYHGEKSITLDKARDVKMELVTKSGQTIVLKPKVALQDGEIIDSMFMSKKALCEFYER CCCCCCCCCEEECCCCCCEEEEEECCCCEEEECCCEECCCCHHHHHHHHHHHHHHHHHHH EMEDCREAGILFSLHVKATMMKVSHPIVFGHCVKIYYKDAFEKHGKLFDELGVNVNNGMA HHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH TLYEKIETLPASKREEIIRDLHACQEHRPRLAMVDSAKGITNFHSPNDVIVDASMPAMIR HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHH AGGKMWGADGKPYDCKAVMPESTFARIYQEMINFCKWHGNFDPRTMGTVPNVGLMAQKAE CCCCEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFEIQEDGVANIVDLATGEVLLSQNVEQGDIWRMCQVKDAPIRDWVKLAVTRA HHCCCCCEEEECCCCCHHHHHHHCCHHHHHCCCCCCCCEEHHCCCCCCHHHHHHHHHHHH RNSGMPAVFWLDPYRPHENELIKKVQTYLKDHDTSGLDIHIMSQVRAMRFTLERVARGLD CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCC TISVTGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLLEEN EEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHC HLRWDSLGEFLALAVSLEDLGIKTGNAKAKILAKTLDLATGKLLDENKSPSRRTGELDNR CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC GSQFYLSLYWAQALAEQSEDKELQARFAPVAKQLADGEQQILAELKAVQGKPADIGGYYL CCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEC PDATKCSAVMRPSATFNAAIAAVRA CCCHHHHHHHCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]