Click here to switch to the map view.

The map label for this gene is ymdB [C]

Identifier: 34499018

GI number: 34499018

Start: 3869605

End: 3870117

Strand: Reverse

Name: ymdB [C]

Synonym: CV_3563

Alternate gene names: 34499018

Gene position: 3870117-3869605 (Counterclockwise)

Preceding gene: 34499020

Following gene: 34499016

Centisome position: 81.46

GC content: 69.59

Gene sequence:

>513_bases
ATGGATGATTTGCTGCGCTGCGTGCAGGGCGATATTACGCGGATGCGGGTGGACGCCATCGTCAATGCCGCCAACAGCCG
CCTGCTGGGCGGCGGCGGGGTGGACGGCGCCATCCACCGGGCGGCGGGGCCGGCGTTGCTGGAAGCCTGCCGCAGGCTGG
GTGGTTGTCCCACCGGGGAGGCTAGGCTGACCGAAGGCTATCTGTTGCCCGCCCGTTATGTGATCCATACGGTGGGACCG
GTCTGGCAGGGCGGGGACTGCGGCGAGCCGGCGTTGTTGGCGGCCTGCTACCGCAACAGCCTGGCGCTGGCCGCGCGCCA
AGGCGTGGCCAGCATCGCGTTTCCGGCGATCAGCTGCGGGGTTTATGGCTATCCGCTGGAGGCGGCTTGCGCGCTGGCGG
TCACGACCCTGCGCCATTGGCTGTCTGGTTGCGACCACCCCTTGCTCGAAGTCCGGCTGGTGGCCTTCGACGCGCTGGCC
TTGAGGGCCTACCAGCGGGCGCTCGAGGCCTAG

Upstream 100 bases:

>100_bases
ATGCATTCCGGTTGCGCGCCTAGGCTGGACGTCATGATACCACCCGACGGCTTTTGGCGGCCGGTGATCGGGCGTAAGCT
CAGAGACATGAGGAGGCGAT

Downstream 100 bases:

>100_bases
CTGACCTCGCCCTTGGCCGGGCGCGGCAGCTGGCCGCCGCAGTGCTTGCAGTGGCGCGCGTCCCAGTCGTGCCCCTCGCT
GAAACAGTGCGGACACAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MDDLLRCVQGDITRMRVDAIVNAANSRLLGGGGVDGAIHRAAGPALLEACRRLGGCPTGEARLTEGYLLPARYVIHTVGP
VWQGGDCGEPALLAACYRNSLALAARQGVASIAFPAISCGVYGYPLEAACALAVTTLRHWLSGCDHPLLEVRLVAFDALA
LRAYQRALEA

Sequences:

>Translated_170_residues
MDDLLRCVQGDITRMRVDAIVNAANSRLLGGGGVDGAIHRAAGPALLEACRRLGGCPTGEARLTEGYLLPARYVIHTVGP
VWQGGDCGEPALLAACYRNSLALAARQGVASIAFPAISCGVYGYPLEAACALAVTTLRHWLSGCDHPLLEVRLVAFDALA
LRAYQRALEA
>Mature_170_residues
MDDLLRCVQGDITRMRVDAIVNAANSRLLGGGGVDGAIHRAAGPALLEACRRLGGCPTGEARLTEGYLLPARYVIHTVGP
VWQGGDCGEPALLAACYRNSLALAARQGVASIAFPAISCGVYGYPLEAACALAVTTLRHWLSGCDHPLLEVRLVAFDALA
LRAYQRALEA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=161, Percent_Identity=50.3105590062112, Blast_Score=168, Evalue=2e-42,
Organism=Homo sapiens, GI13569840, Length=143, Percent_Identity=54.5454545454545, Blast_Score=155, Evalue=1e-38,
Organism=Homo sapiens, GI207450721, Length=161, Percent_Identity=38.5093167701863, Blast_Score=109, Evalue=1e-24,
Organism=Homo sapiens, GI8923143, Length=135, Percent_Identity=41.4814814814815, Blast_Score=109, Evalue=1e-24,
Organism=Homo sapiens, GI154813199, Length=168, Percent_Identity=35.7142857142857, Blast_Score=92, Evalue=2e-19,
Organism=Homo sapiens, GI20336746, Length=169, Percent_Identity=31.3609467455621, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI93141018, Length=172, Percent_Identity=27.906976744186, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI93141020, Length=172, Percent_Identity=27.906976744186, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI4758496, Length=172, Percent_Identity=27.906976744186, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI226371718, Length=170, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI226371716, Length=170, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI226371714, Length=170, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI226371712, Length=170, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI226371710, Length=170, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI226371706, Length=170, Percent_Identity=31.7647058823529, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=53.1791907514451, Blast_Score=165, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17538214, Length=161, Percent_Identity=47.2049689440994, Blast_Score=129, Evalue=8e-31,
Organism=Drosophila melanogaster, GI24586353, Length=137, Percent_Identity=35.036496350365, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 17871; Mature: 17871

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLLRCVQGDITRMRVDAIVNAANSRLLGGGGVDGAIHRAAGPALLEACRRLGGCPTGE
CHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHCCHHHHHHHHHHCCCCCCC
ARLTEGYLLPARYVIHTVGPVWQGGDCGEPALLAACYRNSLALAARQGVASIAFPAISCG
CCCCCCEECHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC
VYGYPLEAACALAVTTLRHWLSGCDHPLLEVRLVAFDALALRAYQRALEA
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDDLLRCVQGDITRMRVDAIVNAANSRLLGGGGVDGAIHRAAGPALLEACRRLGGCPTGE
CHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHCCHHHHHHHHHHCCCCCCC
ARLTEGYLLPARYVIHTVGPVWQGGDCGEPALLAACYRNSLALAARQGVASIAFPAISCG
CCCCCCEECHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC
VYGYPLEAACALAVTTLRHWLSGCDHPLLEVRLVAFDALALRAYQRALEA
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]