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The map label for this gene is ygiD [H]

Identifier: 34499005

GI number: 34499005

Start: 3858750

End: 3859529

Strand: Direct

Name: ygiD [H]

Synonym: CV_3550

Alternate gene names: 34499005

Gene position: 3858750-3859529 (Clockwise)

Preceding gene: 34499004

Following gene: 34499009

Centisome position: 81.22

GC content: 68.72

Gene sequence:

>780_bases
ATGACCACCCGACAACCCTCGCTATTTATTTCCCACGGCGCGCCGACGCTGCCGATAGAAGACAGCCCCACCCGCCATTT
CCTGGAACAGCTGGGACGCGATTGGCCGCGCCCGCGCGCCATCGTCATCGTGTCCGCCCACTGGGAAGCGCGCGCCCTCA
CCGTCAACCTGCAGCCCCGGCCTGAAACGATGTACGACTTCGGCGGCTTCCCTCCGGTATTGCGCACGCTGCGCTACCCG
GCCGCCACCGACGCGGCGCTGGCCGAGCGCGTGATCGGCCTGCTGGACGCTGCCGGCCTGCCAGTGGCCGCCACCGAGGA
ACGCCCGCTGGACCATGGCATGTGGACGCCGCTGATGCTGATGTTTCCCCAGGCCGACATCCCGCTGGTGATGATCTCGC
TGCGCCACCAGGCCGGCGTCGCCGAGCACTACGCGCTGGGCCAGGCGCTCAAGCCCCTGCGCGACGACAACGTGCTGGTG
ATAGGCAGCGGCAGCTATACGCATAATCTGTGGGAGCTGAGCCCGGAAGGCAGCGAGCCGGCGCCCTGGGCGGCGGACTT
CGCCGGCTGGATGGACCAGGCGCTGCTGGACAACCGCCGCGACGACATCGTCCACTGGCAACAGCGCGCGCCCTACCCGC
GCGAAAACCATCCCAGCGACGAGCACTTCCAGCCGCTGCTGGTGGCGCTGGGCGCGTCGGATGACGACGCGGTTCCGGTC
AAGCTGCACGACGACTGGCGCATGGGTTCGCTGTCGATGGCGTGCTGGCGCTTCGACTGA

Upstream 100 bases:

>100_bases
TTATTGAACAAAAGTAAATAATAAAGTGAGAAAACCGGCGTTTTTTTAACCGCCACGCCGGCGTAAGCTGTTGCCATACC
CCCATTGCAGGCAACAGATC

Downstream 100 bases:

>100_bases
GCAAAAGCGCCTACAGGGTGCGCAGCCTGCCGCGGAAATCGTCCAGGCGGCGGTAACCCTTGACCCGCATCAGCGCCGCC
AGCTCGCCGGCGATGCGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTTRQPSLFISHGAPTLPIEDSPTRHFLEQLGRDWPRPRAIVIVSAHWEARALTVNLQPRPETMYDFGGFPPVLRTLRYP
AATDAALAERVIGLLDAAGLPVAATEERPLDHGMWTPLMLMFPQADIPLVMISLRHQAGVAEHYALGQALKPLRDDNVLV
IGSGSYTHNLWELSPEGSEPAPWAADFAGWMDQALLDNRRDDIVHWQQRAPYPRENHPSDEHFQPLLVALGASDDDAVPV
KLHDDWRMGSLSMACWRFD

Sequences:

>Translated_259_residues
MTTRQPSLFISHGAPTLPIEDSPTRHFLEQLGRDWPRPRAIVIVSAHWEARALTVNLQPRPETMYDFGGFPPVLRTLRYP
AATDAALAERVIGLLDAAGLPVAATEERPLDHGMWTPLMLMFPQADIPLVMISLRHQAGVAEHYALGQALKPLRDDNVLV
IGSGSYTHNLWELSPEGSEPAPWAADFAGWMDQALLDNRRDDIVHWQQRAPYPRENHPSDEHFQPLLVALGASDDDAVPV
KLHDDWRMGSLSMACWRFD
>Mature_258_residues
TTRQPSLFISHGAPTLPIEDSPTRHFLEQLGRDWPRPRAIVIVSAHWEARALTVNLQPRPETMYDFGGFPPVLRTLRYPA
ATDAALAERVIGLLDAAGLPVAATEERPLDHGMWTPLMLMFPQADIPLVMISLRHQAGVAEHYALGQALKPLRDDNVLVI
GSGSYTHNLWELSPEGSEPAPWAADFAGWMDQALLDNRRDDIVHWQQRAPYPRENHPSDEHFQPLLVALGASDDDAVPVK
LHDDWRMGSLSMACWRFD

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=260, Percent_Identity=38.4615384615385, Blast_Score=156, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29041; Mature: 28910

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTRQPSLFISHGAPTLPIEDSPTRHFLEQLGRDWPRPRAIVIVSAHWEARALTVNLQPR
CCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCC
PETMYDFGGFPPVLRTLRYPAATDAALAERVIGLLDAAGLPVAATEERPLDHGMWTPLML
CCHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHE
MFPQADIPLVMISLRHQAGVAEHYALGQALKPLRDDNVLVIGSGSYTHNLWELSPEGSEP
ECCCCCCCEEEEEEHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEECCCCCCC
APWAADFAGWMDQALLDNRRDDIVHWQQRAPYPRENHPSDEHFQPLLVALGASDDDAVPV
CCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHCCEEEEEECCCCCCEEEE
KLHDDWRMGSLSMACWRFD
EECCCCCCCCEEEEEEECC
>Mature Secondary Structure 
TTRQPSLFISHGAPTLPIEDSPTRHFLEQLGRDWPRPRAIVIVSAHWEARALTVNLQPR
CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCC
PETMYDFGGFPPVLRTLRYPAATDAALAERVIGLLDAAGLPVAATEERPLDHGMWTPLML
CCHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHE
MFPQADIPLVMISLRHQAGVAEHYALGQALKPLRDDNVLVIGSGSYTHNLWELSPEGSEP
ECCCCCCCEEEEEEHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEECCCCCCC
APWAADFAGWMDQALLDNRRDDIVHWQQRAPYPRENHPSDEHFQPLLVALGASDDDAVPV
CCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHCCEEEEEECCCCCCEEEE
KLHDDWRMGSLSMACWRFD
EECCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]