Click here to switch to the map view.

The map label for this gene is ynfL [H]

Identifier: 34498860

GI number: 34498860

Start: 3699237

End: 3699959

Strand: Direct

Name: ynfL [H]

Synonym: CV_3405

Alternate gene names: 34498860

Gene position: 3699237-3699959 (Clockwise)

Preceding gene: 34498857

Following gene: 34498863

Centisome position: 77.86

GC content: 69.71

Gene sequence:

>723_bases
GTGGAGCTGACCGCCGCGGGGCAGCAGCTGCTGCCGCGAGCGCGCCAGATCCTGGCCGACAGCGCGGCGGCGGCTGCCGC
GGTGCGCCGCGCCGCCGACGGCGAAACCGGCGAGCTGCGCATCGGCTTCACCTCCTCATTGCCGCTGACGCCCATCCTGC
ACCACAGCTTGCAGCATTATCGGCAAGCCTACCCCGAGGTCAGGCTGACGCTGAGCGAAATGTTCACCGCCGGCCAGTTC
GACGCGCTGGAGCGCCGCCAGCTGGACCTGGGCTTCGTCCGCTTCAACGGCACCACGCCCAGTCCGCTGATCCGGGTGGA
GGAGCTGCACCGCGACCGGCTATTGGCGGTCGTGCCCAGCGCCCATCCGCTGGCCGAAAGAAAAACGCTGCCGCTGAAAC
TGCTGGCCGGCGAACCCTTGATCGGCTACCCGCGCGAATCCGGCTCCGGCCTCAGCGACGTGGTGCGCCAGCTGGCGCTG
CAAAACGGCCTGGAGTTGAAGATGGTGCAGGAGGCGGGCGAGGCGATCACCCAGATCGGCCTGGTGGCGGCCGGCGTCGG
CATCGCCATCCTGCCCTCGCCGCTGGAATGCGTGCAGATACCGGCGGTGCGCTACGTGCCGCTATCGGACGACGGCGCCT
ATCTGTCCATGGGCATCGCCGTGCGCCGCGACGATGACTCGCCGCTGGTGGCCAATTTCCTGTCAGGGGTGCGCGGCGGC
TAG

Upstream 100 bases:

>100_bases
CGCCGAGCGGCTGCACATCGGCCAACCGCCGCTGAGCCAGCAAATCCAGGCGCTGGAGGCCGAGCTGGGCGCGCCGCTGT
TCCGCCGCCACCAGCGCAAG

Downstream 100 bases:

>100_bases
CGGCCGCCGGATACGTCCAGCAGGCTGCCGGTGCAGAACGACGCGGCGTCGGACAACAGCCAGACGATGGCCTCGGCCAC
TTCGTCGGCCCGGCCGCCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MELTAAGQQLLPRARQILADSAAAAAAVRRAADGETGELRIGFTSSLPLTPILHHSLQHYRQAYPEVRLTLSEMFTAGQF
DALERRQLDLGFVRFNGTTPSPLIRVEELHRDRLLAVVPSAHPLAERKTLPLKLLAGEPLIGYPRESGSGLSDVVRQLAL
QNGLELKMVQEAGEAITQIGLVAAGVGIAILPSPLECVQIPAVRYVPLSDDGAYLSMGIAVRRDDDSPLVANFLSGVRGG

Sequences:

>Translated_240_residues
MELTAAGQQLLPRARQILADSAAAAAAVRRAADGETGELRIGFTSSLPLTPILHHSLQHYRQAYPEVRLTLSEMFTAGQF
DALERRQLDLGFVRFNGTTPSPLIRVEELHRDRLLAVVPSAHPLAERKTLPLKLLAGEPLIGYPRESGSGLSDVVRQLAL
QNGLELKMVQEAGEAITQIGLVAAGVGIAILPSPLECVQIPAVRYVPLSDDGAYLSMGIAVRRDDDSPLVANFLSGVRGG
>Mature_240_residues
MELTAAGQQLLPRARQILADSAAAAAAVRRAADGETGELRIGFTSSLPLTPILHHSLQHYRQAYPEVRLTLSEMFTAGQF
DALERRQLDLGFVRFNGTTPSPLIRVEELHRDRLLAVVPSAHPLAERKTLPLKLLAGEPLIGYPRESGSGLSDVVRQLAL
QNGLELKMVQEAGEAITQIGLVAAGVGIAILPSPLECVQIPAVRYVPLSDDGAYLSMGIAVRRDDDSPLVANFLSGVRGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=232, Percent_Identity=39.6551724137931, Blast_Score=146, Evalue=9e-37,
Organism=Escherichia coli, GI1788887, Length=237, Percent_Identity=27.4261603375527, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI2367136, Length=208, Percent_Identity=25, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 25756; Mature: 25756

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTAAGQQLLPRARQILADSAAAAAAVRRAADGETGELRIGFTSSLPLTPILHHSLQHY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
RQAYPEVRLTLSEMFTAGQFDALERRQLDLGFVRFNGTTPSPLIRVEELHRDRLLAVVPS
HHHCHHHEEEHHHHHCCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCEEEECCC
AHPLAERKTLPLKLLAGEPLIGYPRESGSGLSDVVRQLALQNGLELKMVQEAGEAITQIG
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHH
LVAAGVGIAILPSPLECVQIPAVRYVPLSDDGAYLSMGIAVRRDDDSPLVANFLSGVRGG
HHHHCCCEEECCCCHHHEECCCEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MELTAAGQQLLPRARQILADSAAAAAAVRRAADGETGELRIGFTSSLPLTPILHHSLQHY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
RQAYPEVRLTLSEMFTAGQFDALERRQLDLGFVRFNGTTPSPLIRVEELHRDRLLAVVPS
HHHCHHHEEEHHHHHCCCCHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCCEEEECCC
AHPLAERKTLPLKLLAGEPLIGYPRESGSGLSDVVRQLALQNGLELKMVQEAGEAITQIG
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHH
LVAAGVGIAILPSPLECVQIPAVRYVPLSDDGAYLSMGIAVRRDDDSPLVANFLSGVRGG
HHHHCCCEEECCCCHHHEECCCEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]