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The map label for this gene is cbpD1 [H]

Identifier: 34498778

GI number: 34498778

Start: 3620380

End: 3621528

Strand: Direct

Name: cbpD1 [H]

Synonym: CV_3323

Alternate gene names: 34498778

Gene position: 3620380-3621528 (Clockwise)

Preceding gene: 34498777

Following gene: 34498779

Centisome position: 76.2

GC content: 62.58

Gene sequence:

>1149_bases
ATGAAACCGCATTTTTCCATTGTCATGATGCTGGCAGGATTAAGCACCTCGTCATGGGCGCACGGCACCATGGAAGTGCC
GATCAACCGCACCTACAGTTGCTCCAAGGAAGGCGCCGAATCCCCCAAGACGCCCGCCTGCCAGGAAGCCAAACGCGTCG
GCGGCACACAGGCGATGTACGACTGGAACGGCATCAACCAGAATCCTCCGGGAGACAACCACCAGTCCGTTGTTCCAGAT
GGCACGCTGTGCGGCGGCGGCCAGGCGAAATTTAAGGGCTTCAACCTGGCGCGAACCGACTGGCCGACCACCAATATCGT
CCCGGACGCCAAGGGCAATTTCGAATTCATCTATACCGCGACCATGCCGCACGCCACCAAGTACTTCAAGTTCTACGTCA
CCCGGAACGGCTGGAATCCGAATCAGCCGCTCAAATGGTCGGATCTTGAACCGTTCGGCACTTACAACGGCAATCCGCCG
CTCGACGACAAGCAGCGCTACCACATGACCATGAAGCTGCCGACCGGCAAGACCGGCCGCCACATCATCTACAACGTGTG
GAAGCGTTCGGACAGCGAAGAGGCTTTCTATTCGTGCTCCGACGTCAACTTCACCAACGACGGCAAGCCGGAGCCGCCGC
CGATCTCCAATCCGTGGAAGGAAGCAGGCAGCGTGACCGCCCACGAGAACCTGCCGGACAAGAGCTCGGTGACGCTGCGC
ATCTTCGACAGCCATGGCCGCGACGTGGAAAGCCACAAGGTGGACCTGAGCGCCTCCAGCGGCCAGGCAGCCAATTGGCC
CTACGAACTGGGCGTCAAGGTCAATGCCGCCTCCCAGATCGGCCGCATCGGCGTGATCAGCAGTAAACAACGCGCCGTCA
CGATCAACCCGGTCCGCAGCGCCACCGCCAACCGCGTGTGGCTGAATGAGCGCTATAGCGGCTACCGGTACCAGATCGAC
ATCAAGAAGGGCGACGGCGGGGTGAATCCGCCGGTGCCGGGCGACGAGTGGCGCGAGGGCGTGGCCTACACCGTGGGTCA
GATCGTCAGCTACCAGGGCCGCCGCTATCGCTGCCTGCAGGGCCACACCGCCTGGACCGGCGCCGGCTGGACGCCTTCCA
CCCAGCCCGCGCTGTGGACCCCGGCCTAA

Upstream 100 bases:

>100_bases
ACCATATCCGCAGCATAGCTTGGACTCCGTCGAGGCAAGTGGTGCCAAAGTGGTATCAACTTACAGCGACATTCGGCAAA
CCGACAGACGGAGTCCAAAC

Downstream 100 bases:

>100_bases
ACCGCTAACCCCATAGAAACGCGTCTGGAGGCGGCTCGCCGCCTCCCGCCGCCCCTCGCTTCGAGAAATCCATGAAACGC
TATCCTTTCCTGGCGATGCT

Product: carbohydrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKPHFSIVMMLAGLSTSSWAHGTMEVPINRTYSCSKEGAESPKTPACQEAKRVGGTQAMYDWNGINQNPPGDNHQSVVPD
GTLCGGGQAKFKGFNLARTDWPTTNIVPDAKGNFEFIYTATMPHATKYFKFYVTRNGWNPNQPLKWSDLEPFGTYNGNPP
LDDKQRYHMTMKLPTGKTGRHIIYNVWKRSDSEEAFYSCSDVNFTNDGKPEPPPISNPWKEAGSVTAHENLPDKSSVTLR
IFDSHGRDVESHKVDLSASSGQAANWPYELGVKVNAASQIGRIGVISSKQRAVTINPVRSATANRVWLNERYSGYRYQID
IKKGDGGVNPPVPGDEWREGVAYTVGQIVSYQGRRYRCLQGHTAWTGAGWTPSTQPALWTPA

Sequences:

>Translated_382_residues
MKPHFSIVMMLAGLSTSSWAHGTMEVPINRTYSCSKEGAESPKTPACQEAKRVGGTQAMYDWNGINQNPPGDNHQSVVPD
GTLCGGGQAKFKGFNLARTDWPTTNIVPDAKGNFEFIYTATMPHATKYFKFYVTRNGWNPNQPLKWSDLEPFGTYNGNPP
LDDKQRYHMTMKLPTGKTGRHIIYNVWKRSDSEEAFYSCSDVNFTNDGKPEPPPISNPWKEAGSVTAHENLPDKSSVTLR
IFDSHGRDVESHKVDLSASSGQAANWPYELGVKVNAASQIGRIGVISSKQRAVTINPVRSATANRVWLNERYSGYRYQID
IKKGDGGVNPPVPGDEWREGVAYTVGQIVSYQGRRYRCLQGHTAWTGAGWTPSTQPALWTPA
>Mature_382_residues
MKPHFSIVMMLAGLSTSSWAHGTMEVPINRTYSCSKEGAESPKTPACQEAKRVGGTQAMYDWNGINQNPPGDNHQSVVPD
GTLCGGGQAKFKGFNLARTDWPTTNIVPDAKGNFEFIYTATMPHATKYFKFYVTRNGWNPNQPLKWSDLEPFGTYNGNPP
LDDKQRYHMTMKLPTGKTGRHIIYNVWKRSDSEEAFYSCSDVNFTNDGKPEPPPISNPWKEAGSVTAHENLPDKSSVTLR
IFDSHGRDVESHKVDLSASSGQAANWPYELGVKVNAASQIGRIGVISSKQRAVTINPVRSATANRVWLNERYSGYRYQID
IKKGDGGVNPPVPGDEWREGVAYTVGQIVSYQGRRYRCLQGHTAWTGAGWTPSTQPALWTPA

Specific function: Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin [H]

COG id: COG3397

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 chitin-binding type-4 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003610
- InterPro:   IPR004302
- InterPro:   IPR020879
- InterPro:   IPR014756 [H]

Pfam domain/function: PF02839 CBM_5_12; PF03067 Chitin_bind_3 [H]

EC number: NA

Molecular weight: Translated: 42321; Mature: 42321

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPHFSIVMMLAGLSTSSWAHGTMEVPINRTYSCSKEGAESPKTPACQEAKRVGGTQAMY
CCCHHEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEE
DWNGINQNPPGDNHQSVVPDGTLCGGGQAKFKGFNLARTDWPTTNIVPDAKGNFEFIYTA
ECCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCEEEECCCCCCCCCCCCCCCEEEEEEE
TMPHATKYFKFYVTRNGWNPNQPLKWSDLEPFGTYNGNPPLDDKQRYHMTMKLPTGKTGR
CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
HIIYNVWKRSDSEEAFYSCSDVNFTNDGKPEPPPISNPWKEAGSVTAHENLPDKSSVTLR
EEEEEEECCCCCCHHEEEECCCCCCCCCCCCCCCCCCCHHHHCCEEECCCCCCCCCEEEE
IFDSHGRDVESHKVDLSASSGQAANWPYELGVKVNAASQIGRIGVISSKQRAVTINPVRS
EECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECHHHCCEEEEECCCCCEEEECCCCC
ATANRVWLNERYSGYRYQIDIKKGDGGVNPPVPGDEWREGVAYTVGQIVSYQGRRYRCLQ
CCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
GHTAWTGAGWTPSTQPALWTPA
CCCEECCCCCCCCCCCEEECCC
>Mature Secondary Structure
MKPHFSIVMMLAGLSTSSWAHGTMEVPINRTYSCSKEGAESPKTPACQEAKRVGGTQAMY
CCCHHEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEE
DWNGINQNPPGDNHQSVVPDGTLCGGGQAKFKGFNLARTDWPTTNIVPDAKGNFEFIYTA
ECCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCEEEECCCCCCCCCCCCCCCEEEEEEE
TMPHATKYFKFYVTRNGWNPNQPLKWSDLEPFGTYNGNPPLDDKQRYHMTMKLPTGKTGR
CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
HIIYNVWKRSDSEEAFYSCSDVNFTNDGKPEPPPISNPWKEAGSVTAHENLPDKSSVTLR
EEEEEEECCCCCCHHEEEECCCCCCCCCCCCCCCCCCCHHHHCCEEECCCCCCCCCEEEE
IFDSHGRDVESHKVDLSASSGQAANWPYELGVKVNAASQIGRIGVISSKQRAVTINPVRS
EECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECHHHCCEEEEECCCCCEEEECCCCC
ATANRVWLNERYSGYRYQIDIKKGDGGVNPPVPGDEWREGVAYTVGQIVSYQGRRYRCLQ
CCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
GHTAWTGAGWTPSTQPALWTPA
CCCEECCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA