| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498675
Identifier: 34498675
GI number: 34498675
Start: 3500452
End: 3502782
Strand: Reverse
Name: 34498675
Synonym: CV_3220
Alternate gene names: NA
Gene position: 3502782-3500452 (Counterclockwise)
Preceding gene: 34498676
Following gene: 34498674
Centisome position: 73.73
GC content: 72.46
Gene sequence:
>2331_bases CTGGCCGCCATCGCGCCGGCCTGGCCGCTGGACAGCCTGGTGGCCAGCTCGCCCTACTGGGGTCTGCGCGAACAGTCTTT CAGCCAGGCCGCCGACACGCTGCGCCTAGTGGCGGATAGCCCGCTGCACCTGCCGCGCGGCGAATATCTGGCTGCCTGGC GGCGCGGCGAAATCAGCGCCGCGGCGCTGGAGACCGCGCTGTCGGAAACGGGCTGGACCGGCGGCGCGCAGGCCTGGCTG GACGCCGAACCGCGCGATGTCGATCCTGTCCCGCCGCCGCGGCTGCTGGCAGCCTGCCATCGCGAAGCGGCGGGCCCGCT CAGCGCGCAAAGCTGGACCGATGTCGTCATCCAGCAGATCAGCCAGTATTGCGCGGCCTGGTTCGACCGCGACCAGGCCA ACTGGCACCTGGACCATGAGCGCGGCTTTTACGCCGCCTGGCTGGAGCAGATGCGCCATCCTTACGGCCTGAGCGCCTTG CCGGAGCGGCGCGAACAGCTGCGCCTGCGCGCCGAGCGGCTGCCCGGCGACGCGGAGGCCATGCTGGCCGCGGGGCTGGC GCAGCTGCAAGCGGAGCCGGAATGGCTGAAGCCCTGGCTGCAGGCGCTGCTGATGCGCAATAACGGCTGGGCGGCCTGGT GCGCCTACCTTGGCTGGCAGGCCGGGCTGAAAGGCGAAACCGACGGCCACCTGCGCCAGCTGCTGGCCATCCAGATGGCT TGGGAATGCCTGCTGGACGACGGCGCGCGCGGGCCGGACAGCGCCTGGGCGGCCTGGCACCGCGATTGGGGGCTGCGCCT GCATGGCCGCGCCGACCCGCGCACGCTGATCTGGCAGCGCGCGCATGAACTGTCCTTGCATGCGCCACTGGCCCAGGCGC TGTGCCGCGAATCCGCCGCCGAAGACGGCACCCGTCCGGCGATGCAAGCGGTGTTCTGCATAGATGTGCGTTCCGAACCG CTGCGCCGCGCGCTGGAGCAAACCGTTCCCGCCAGCCGCACCTACGGCTTCGCCGGCTTTTTCGGTCTGCCGCTGGCCTA CCGCGTGCCGGGCAGCGATGTCGCCCAGCCGCGACTGCCGGTACTGCTGGCGCCGGGCTGGGAAGCGAGCGCGGCGCCCG CTTCCAAGCCATCTGCCGCGCGGCGCGGTTGGCGGGCCTTCCAGCGCTCGCCGCTGTCTGGGTTCGCCCTGGTGGAAAGC GCCGGCCTCGCCAAGCTGGCGGCGCTGGCCGGGCGCAGCAAGGCGCGCGGCCGTCAAGCCGCGCTGCCGCAGCTCGACCC CTGGCTGACGCCGGATAGCGCCAAGCCTGTGCCCCGGGACGGCCTGGGCCTGGAGAGGCGCGCGGAAATCGTCTCCGGCC TGCTGCCAGCCATGGGCCTGGCCGGCGCGCTCGCCCCCTGGGTGCTGCTGGTCGGCCATGCCAGCCACGTCAGCAACAAT CCGCAGGCGGCGGCGCTGCAATGCGGCGCCTGCGGCGGGCATGGCGGCCACCAGCATGTGCGCTTGCTGGCCGGCTGGCT CAATGATCCGGCGCTGCGCGAGCGGCTGGCGGCGCTGGGCCGGGCCATTCCCGCCGACACGGTATTCCTGCCCGCGCTGC ACTTGACCCATAGCGACGAAATCCTGTTGCTGGACGCGGACACCCTGAGCGCGGACGCGCGCGCCCGTCTGCCGGGCCTG CAGGCGCAATTGCGGGCGGCGTCGGCGCTGGCGCGGCGGCGACGCGCGCCGCTGGTAGGCCTCGCGCCGGAGGCGGACGA CGCCATTCTGCTGAACAAAATGCGGCAGAAGGGAGACGACTGGGCGGAGACCCGGCCCGAATGGGGGCTGGCCGGCAATG CGCTGTTCATCGCCGCGCCGCGCGCCAAGACGCGCAAGCTGGACCTGGGCGGCCGCGCCTTCCTGCATGAATACGACTGG CGCGCCGACCCGGACGGCAAAGGGCTGCAGGCCATCCTCGCCGCGCCCATGGTGGTGGCGCACTGGATCAATATGCAGTA CTTCGCCTCCACGGCGGACCCGCGCCGCTTCGGCAGCGGCAACAAGCTGCTGCACAATGTGGTGGGCGGCCGCATCGGCG TGTTCGAAGGCAATAGCGGCGACTTGCGCATCGGCCTGGCCTGGCAGTCGGTGCACGACGGCCAGCGCCTGCGCCACGCT CCGCTGCGGCTGGCCGCCTGCATAGACGCGCCGCCGGACAGGCTGGCGGAGGCGCTGGCGGCGCAGCCCGTCCCGCGCCA GCTGGCGGAAAACGGCTGGCTGCACCTGTATTGCGTGCACGGCGACACGCCGCTGCGCTGGCATGCCGATGGCGGGTGGC GACATGACTGA
Upstream 100 bases:
>100_bases CTTGGCCGCCGCCTTCCGCGTCCGCCCGCGCCCTTCGCCCTGAAATGGCCTCAACTGCGGGAGAGCAGCCGTGATTGACA GCAAGGCCATAGACCAAGCG
Downstream 100 bases:
>100_bases GCGCCGCGCCGCCTTGCTGACCCGCCACGGCAAGCACGCCGCCATCGCGCCCGCGCTGGCCGGCATAGGCTGGGACCTGG CGCTGGTGGACAGCTTCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 776; Mature: 775
Protein sequence:
>776_residues MAAIAPAWPLDSLVASSPYWGLREQSFSQAADTLRLVADSPLHLPRGEYLAAWRRGEISAAALETALSETGWTGGAQAWL DAEPRDVDPVPPPRLLAACHREAAGPLSAQSWTDVVIQQISQYCAAWFDRDQANWHLDHERGFYAAWLEQMRHPYGLSAL PERREQLRLRAERLPGDAEAMLAAGLAQLQAEPEWLKPWLQALLMRNNGWAAWCAYLGWQAGLKGETDGHLRQLLAIQMA WECLLDDGARGPDSAWAAWHRDWGLRLHGRADPRTLIWQRAHELSLHAPLAQALCRESAAEDGTRPAMQAVFCIDVRSEP LRRALEQTVPASRTYGFAGFFGLPLAYRVPGSDVAQPRLPVLLAPGWEASAAPASKPSAARRGWRAFQRSPLSGFALVES AGLAKLAALAGRSKARGRQAALPQLDPWLTPDSAKPVPRDGLGLERRAEIVSGLLPAMGLAGALAPWVLLVGHASHVSNN PQAAALQCGACGGHGGHQHVRLLAGWLNDPALRERLAALGRAIPADTVFLPALHLTHSDEILLLDADTLSADARARLPGL QAQLRAASALARRRRAPLVGLAPEADDAILLNKMRQKGDDWAETRPEWGLAGNALFIAAPRAKTRKLDLGGRAFLHEYDW RADPDGKGLQAILAAPMVVAHWINMQYFASTADPRRFGSGNKLLHNVVGGRIGVFEGNSGDLRIGLAWQSVHDGQRLRHA PLRLAACIDAPPDRLAEALAAQPVPRQLAENGWLHLYCVHGDTPLRWHADGGWRHD
Sequences:
>Translated_776_residues MAAIAPAWPLDSLVASSPYWGLREQSFSQAADTLRLVADSPLHLPRGEYLAAWRRGEISAAALETALSETGWTGGAQAWL DAEPRDVDPVPPPRLLAACHREAAGPLSAQSWTDVVIQQISQYCAAWFDRDQANWHLDHERGFYAAWLEQMRHPYGLSAL PERREQLRLRAERLPGDAEAMLAAGLAQLQAEPEWLKPWLQALLMRNNGWAAWCAYLGWQAGLKGETDGHLRQLLAIQMA WECLLDDGARGPDSAWAAWHRDWGLRLHGRADPRTLIWQRAHELSLHAPLAQALCRESAAEDGTRPAMQAVFCIDVRSEP LRRALEQTVPASRTYGFAGFFGLPLAYRVPGSDVAQPRLPVLLAPGWEASAAPASKPSAARRGWRAFQRSPLSGFALVES AGLAKLAALAGRSKARGRQAALPQLDPWLTPDSAKPVPRDGLGLERRAEIVSGLLPAMGLAGALAPWVLLVGHASHVSNN PQAAALQCGACGGHGGHQHVRLLAGWLNDPALRERLAALGRAIPADTVFLPALHLTHSDEILLLDADTLSADARARLPGL QAQLRAASALARRRRAPLVGLAPEADDAILLNKMRQKGDDWAETRPEWGLAGNALFIAAPRAKTRKLDLGGRAFLHEYDW RADPDGKGLQAILAAPMVVAHWINMQYFASTADPRRFGSGNKLLHNVVGGRIGVFEGNSGDLRIGLAWQSVHDGQRLRHA PLRLAACIDAPPDRLAEALAAQPVPRQLAENGWLHLYCVHGDTPLRWHADGGWRHD >Mature_775_residues AAIAPAWPLDSLVASSPYWGLREQSFSQAADTLRLVADSPLHLPRGEYLAAWRRGEISAAALETALSETGWTGGAQAWLD AEPRDVDPVPPPRLLAACHREAAGPLSAQSWTDVVIQQISQYCAAWFDRDQANWHLDHERGFYAAWLEQMRHPYGLSALP ERREQLRLRAERLPGDAEAMLAAGLAQLQAEPEWLKPWLQALLMRNNGWAAWCAYLGWQAGLKGETDGHLRQLLAIQMAW ECLLDDGARGPDSAWAAWHRDWGLRLHGRADPRTLIWQRAHELSLHAPLAQALCRESAAEDGTRPAMQAVFCIDVRSEPL RRALEQTVPASRTYGFAGFFGLPLAYRVPGSDVAQPRLPVLLAPGWEASAAPASKPSAARRGWRAFQRSPLSGFALVESA GLAKLAALAGRSKARGRQAALPQLDPWLTPDSAKPVPRDGLGLERRAEIVSGLLPAMGLAGALAPWVLLVGHASHVSNNP QAAALQCGACGGHGGHQHVRLLAGWLNDPALRERLAALGRAIPADTVFLPALHLTHSDEILLLDADTLSADARARLPGLQ AQLRAASALARRRRAPLVGLAPEADDAILLNKMRQKGDDWAETRPEWGLAGNALFIAAPRAKTRKLDLGGRAFLHEYDWR ADPDGKGLQAILAAPMVVAHWINMQYFASTADPRRFGSGNKLLHNVVGGRIGVFEGNSGDLRIGLAWQSVHDGQRLRHAP LRLAACIDAPPDRLAEALAAQPVPRQLAENGWLHLYCVHGDTPLRWHADGGWRHD
Specific function: Unknown
COG id: COG3002
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0753 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y3220_CHRVO (Q7NT42)
Other databases:
- EMBL: AE016825 - RefSeq: NP_902890.1 - GeneID: 2548880 - GenomeReviews: AE016825_GR - KEGG: cvi:CV_3220 - NMPDR: fig|243365.1.peg.3220 - HOGENOM: HBG520117 - OMA: LWQAELS - BioCyc: CVIO243365:CV_3220-MONOMER - HAMAP: MF_01871 - InterPro: IPR018752
Pfam domain/function: PF10070 DUF2309
EC number: NA
Molecular weight: Translated: 84576; Mature: 84445
Theoretical pI: Translated: 8.01; Mature: 8.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAIAPAWPLDSLVASSPYWGLREQSFSQAADTLRLVADSPLHLPRGEYLAAWRRGEISA CCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHH AALETALSETGWTGGAQAWLDAEPRDVDPVPPPRLLAACHREAAGPLSAQSWTDVVIQQI HHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH SQYCAAWFDRDQANWHLDHERGFYAAWLEQMRHPYGLSALPERREQLRLRAERLPGDAEA HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHH MLAAGLAQLQAEPEWLKPWLQALLMRNNGWAAWCAYLGWQAGLKGETDGHLRQLLAIQMA HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH WECLLDDGARGPDSAWAAWHRDWGLRLHGRADPRTLIWQRAHELSLHAPLAQALCRESAA HHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EDGTRPAMQAVFCIDVRSEPLRRALEQTVPASRTYGFAGFFGLPLAYRVPGSDVAQPRLP CCCCCHHHHEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCC VLLAPGWEASAAPASKPSAARRGWRAFQRSPLSGFALVESAGLAKLAALAGRSKARGRQA EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCHHHCCCCC ALPQLDPWLTPDSAKPVPRDGLGLERRAEIVSGLLPAMGLAGALAPWVLLVGHASHVSNN CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCC PQAAALQCGACGGHGGHQHVRLLAGWLNDPALRERLAALGRAIPADTVFLPALHLTHSDE CCHHEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEECCEEECCCCC ILLLDADTLSADARARLPGLQAQLRAASALARRRRAPLVGLAPEADDAILLNKMRQKGDD EEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCC WAETRPEWGLAGNALFIAAPRAKTRKLDLGGRAFLHEYDWRADPDGKGLQAILAAPMVVA HHHCCCCCCCCCCEEEEECCCCCCEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHH HWINMQYFASTADPRRFGSGNKLLHNVVGGRIGVFEGNSGDLRIGLAWQSVHDGQRLRHA HHHHHHHEECCCCCHHCCCCHHHHHHHHCCEEEEEECCCCCEEEEEEECCCCCCHHHHHH PLRLAACIDAPPDRLAEALAAQPVPRQLAENGWLHLYCVHGDTPLRWHADGGWRHD HHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCEEECCCCCCCCC >Mature Secondary Structure AAIAPAWPLDSLVASSPYWGLREQSFSQAADTLRLVADSPLHLPRGEYLAAWRRGEISA CCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHH AALETALSETGWTGGAQAWLDAEPRDVDPVPPPRLLAACHREAAGPLSAQSWTDVVIQQI HHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH SQYCAAWFDRDQANWHLDHERGFYAAWLEQMRHPYGLSALPERREQLRLRAERLPGDAEA HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHH MLAAGLAQLQAEPEWLKPWLQALLMRNNGWAAWCAYLGWQAGLKGETDGHLRQLLAIQMA HHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH WECLLDDGARGPDSAWAAWHRDWGLRLHGRADPRTLIWQRAHELSLHAPLAQALCRESAA HHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EDGTRPAMQAVFCIDVRSEPLRRALEQTVPASRTYGFAGFFGLPLAYRVPGSDVAQPRLP CCCCCHHHHEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHCCEEEECCCCCCCCCCCC VLLAPGWEASAAPASKPSAARRGWRAFQRSPLSGFALVESAGLAKLAALAGRSKARGRQA EEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCHHHCCCCC ALPQLDPWLTPDSAKPVPRDGLGLERRAEIVSGLLPAMGLAGALAPWVLLVGHASHVSNN CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCC PQAAALQCGACGGHGGHQHVRLLAGWLNDPALRERLAALGRAIPADTVFLPALHLTHSDE CCHHEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEECCEEECCCCC ILLLDADTLSADARARLPGLQAQLRAASALARRRRAPLVGLAPEADDAILLNKMRQKGDD EEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCC WAETRPEWGLAGNALFIAAPRAKTRKLDLGGRAFLHEYDWRADPDGKGLQAILAAPMVVA HHHCCCCCCCCCCEEEEECCCCCCEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHH HWINMQYFASTADPRRFGSGNKLLHNVVGGRIGVFEGNSGDLRIGLAWQSVHDGQRLRHA HHHHHHHEECCCCCHHCCCCHHHHHHHHCCEEEEEECCCCCEEEEEEECCCCCCHHHHHH PLRLAACIDAPPDRLAEALAAQPVPRQLAENGWLHLYCVHGDTPLRWHADGGWRHD HHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 14500782