| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is dsbH
Identifier: 34498648
GI number: 34498648
Start: 3477332
End: 3477832
Strand: Reverse
Name: dsbH
Synonym: CV_3193
Alternate gene names: 34498648
Gene position: 3477832-3477332 (Counterclockwise)
Preceding gene: 34498649
Following gene: 34498645
Centisome position: 73.2
GC content: 67.86
Gene sequence:
>501_bases ATGGGTTTGAATATCACGAACCGTCAGGGGTTCTTGCTGGTGGCGGCGGCTTGCGCCGGCGCCATCGGCTTTGCGCTGTT CGCGCAATACCAGCTGGGGGAGGAGCCATGCCCGCTGTGCATTCTGCAGCGCATCGGCGTGATGGCGGTCGGCGCGCTGG CCTTGCTGGCCGCGTTGCACAATCCCGGCAAGACTGGCGCGAAGGTATGGGGCGGGCTGATGACGCTGGCCGCGCTTTCC GGCGCGGGCGTGTCGCTGCGCCAGCTGTGGCTGCAGAGCCTGCCGGCCGACCAGGTGCCGCAGTGCGGGCCGGGCCTGGA GTTCCTGATGGAGTCCTTCCCATTGTGGGAGGTGTTGTCCAAGGTGCTGAAGGGCAGCGGCGAGTGCGCGGCCATCCAGG GGCGTTTCCTCGGCATGACCATGCCGTTCTGGGTGGCGGTGTTCTTTGCCGGCGTGATCGTCTGGACCTTGTGGCTGGTT GGGCGCCGCCGCCGCGGCTGA
Upstream 100 bases:
>100_bases GCAGGCTCCCCGCTCCGGAACTTTGCCGGGCCGCCCCAATCTCAGCTTTTCCGTTTACACTGCGTTCACTCACAAGACAT AACAGGAAAGGTCAAGGGGG
Downstream 100 bases:
>100_bases ACCGTTTCCCGGATGTTCAATCCTGCCGCGCGGACGTTATGTCCGCGCTTTTTTTTGCGCCGTTCCCGGGTGGGCCTTGG TAAAGGCTGGCGCGGTTGCG
Product: protein-disulfide reductase
Products: glutathione disulfide; Protein dithiol
Alternate protein names: Disulfide oxidoreductase
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MGLNITNRQGFLLVAAACAGAIGFALFAQYQLGEEPCPLCILQRIGVMAVGALALLAALHNPGKTGAKVWGGLMTLAALS GAGVSLRQLWLQSLPADQVPQCGPGLEFLMESFPLWEVLSKVLKGSGECAAIQGRFLGMTMPFWVAVFFAGVIVWTLWLV GRRRRG
Sequences:
>Translated_166_residues MGLNITNRQGFLLVAAACAGAIGFALFAQYQLGEEPCPLCILQRIGVMAVGALALLAALHNPGKTGAKVWGGLMTLAALS GAGVSLRQLWLQSLPADQVPQCGPGLEFLMESFPLWEVLSKVLKGSGECAAIQGRFLGMTMPFWVAVFFAGVIVWTLWLV GRRRRG >Mature_165_residues GLNITNRQGFLLVAAACAGAIGFALFAQYQLGEEPCPLCILQRIGVMAVGALALLAALHNPGKTGAKVWGGLMTLAALSG AGVSLRQLWLQSLPADQVPQCGPGLEFLMESFPLWEVLSKVLKGSGECAAIQGRFLGMTMPFWVAVFFAGVIVWTLWLVG RRRRG
Specific function: Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
COG id: COG1495
COG function: function code O; Disulfide bond formation protein DsbB
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DsbB family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DSBB_CHRVO (Q7NT68)
Other databases:
- EMBL: AE016825 - RefSeq: NP_902863.1 - ProteinModelPortal: Q7NT68 - SMR: Q7NT68 - GeneID: 2547167 - GenomeReviews: AE016825_GR - KEGG: cvi:CV_3193 - NMPDR: fig|243365.1.peg.3193 - HOGENOM: HBG637909 - OMA: WAWARAK - ProtClustDB: CLSK2485581 - BioCyc: CVIO243365:CV_3193-MONOMER - GO: GO:0006810 - HAMAP: MF_00286 - InterPro: IPR003752 - InterPro: IPR022920
Pfam domain/function: PF02600 DsbB
EC number: 1.8.4.2
Molecular weight: Translated: 17673; Mature: 17542
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x1220236c)-; HASH(0x11f2e5ac)-; HASH(0x12589f8c)-; HASH(0x1234ac2c)-;
Cys/Met content:
3.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLNITNRQGFLLVAAACAGAIGFALFAQYQLGEEPCPLCILQRIGVMAVGALALLAALH CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC NPGKTGAKVWGGLMTLAALSGAGVSLRQLWLQSLPADQVPQCGPGLEFLMESFPLWEVLS CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHH KVLKGSGECAAIQGRFLGMTMPFWVAVFFAGVIVWTLWLVGRRRRG HHHCCCCCEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCH >Mature Secondary Structure GLNITNRQGFLLVAAACAGAIGFALFAQYQLGEEPCPLCILQRIGVMAVGALALLAALH CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC NPGKTGAKVWGGLMTLAALSGAGVSLRQLWLQSLPADQVPQCGPGLEFLMESFPLWEVLS CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHH KVLKGSGECAAIQGRFLGMTMPFWVAVFFAGVIVWTLWLVGRRRRG HHHCCCCCEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: glutathione; Protein disulfide
Specific reaction: 2 glutathione + protein-disulfide = glutathione disulfide + protein-dithiol
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 14500782