Click here to switch to the map view.

The map label for this gene is ybgL [C]

Identifier: 34498628

GI number: 34498628

Start: 3455368

End: 3456105

Strand: Direct

Name: ybgL [C]

Synonym: CV_3173

Alternate gene names: 34498628

Gene position: 3455368-3456105 (Clockwise)

Preceding gene: 34498627

Following gene: 34498629

Centisome position: 72.73

GC content: 71.95

Gene sequence:

>738_bases
ATGAAAATTGACCTCAACGCCGACCTGGGCGAAGGCTGCGGGGACGACGCCGCGCTGCTCGGCCTGGTCAGTTCCGCCAA
CATCGCCTGCGGCTGGCACGCCGGCGACGCCGACACCATGCGCAGAACCGTCCTGCTCGCGCTGGAGAAAGGCGTCGCCA
TCGGCGCCCACCCCGGCTTCCCCGACCGCGAAAACTTCGGCCGCAGCGAAATGCGGCTGCCGATGGAAGCCGCGCGGGCC
GGCCTGCTGTACCAATTGGGCGCGCTGGACGCCATCGTCCGCGCCGAAGGCGGCGCGCTGCGGCACGTCAAGCCCCACGG
CGCGCTGTACAACCAGGCGGCGCGCGAGCCCGAACTGGCCGCCGTACTCGCCCGCGCGATCCGGGACTTCAATCCCGCCT
TGCGGGCGGTCGGCCTGGCCGGAGGGTGCTTCATCGACGCCTGCCGCGCCGAAGGCCTGGAGGTGTGGCAAGAGGGCTTC
GCCGACCGCGGCTACCGCGCCGACGGCAGCCTGGTGCCGCGCGGCCTGCCCGGCGCCCTGTTGCAAGACGACTCCGCCAT
GCTGGCCCAGGCGGAAGACATGGCGCTGCGGCAAACCGTGGCCGCCGTCAACGGCCTGCGCATTCCGGCGCGCGTGGACA
CGCTGTGCCTGCACGGCGACGGCGAGCACGCATTGCGCTTCGCCCGTCTGCTGCGCGAGCGGCTCGAAGCGCTGGGCGTG
GAAATTTGCGCCGACTGA

Upstream 100 bases:

>100_bases
CTGGGCAGCCAGCTGCGTTTCGTGGAGGCCAGCCGGGACGAGGCCGAACAGGCCGACCGGGAACTGCAACGCTACCTGCG
GAGAATCGAGAGGCTGTGCG

Downstream 100 bases:

>100_bases
GCCGGCGCCATCCGGACCACAAGGACGAATCATGGACCAGACCGTCAATCTTTGGCCCTTGCTGGGCATCGCCGCCGTCA
TTCTCGGCTTCCTGCTGCGC

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKIDLNADLGEGCGDDAALLGLVSSANIACGWHAGDADTMRRTVLLALEKGVAIGAHPGFPDRENFGRSEMRLPMEAARA
GLLYQLGALDAIVRAEGGALRHVKPHGALYNQAAREPELAAVLARAIRDFNPALRAVGLAGGCFIDACRAEGLEVWQEGF
ADRGYRADGSLVPRGLPGALLQDDSAMLAQAEDMALRQTVAAVNGLRIPARVDTLCLHGDGEHALRFARLLRERLEALGV
EICAD

Sequences:

>Translated_245_residues
MKIDLNADLGEGCGDDAALLGLVSSANIACGWHAGDADTMRRTVLLALEKGVAIGAHPGFPDRENFGRSEMRLPMEAARA
GLLYQLGALDAIVRAEGGALRHVKPHGALYNQAAREPELAAVLARAIRDFNPALRAVGLAGGCFIDACRAEGLEVWQEGF
ADRGYRADGSLVPRGLPGALLQDDSAMLAQAEDMALRQTVAAVNGLRIPARVDTLCLHGDGEHALRFARLLRERLEALGV
EICAD
>Mature_245_residues
MKIDLNADLGEGCGDDAALLGLVSSANIACGWHAGDADTMRRTVLLALEKGVAIGAHPGFPDRENFGRSEMRLPMEAARA
GLLYQLGALDAIVRAEGGALRHVKPHGALYNQAAREPELAAVLARAIRDFNPALRAVGLAGGCFIDACRAEGLEVWQEGF
ADRGYRADGSLVPRGLPGALLQDDSAMLAQAEDMALRQTVAAVNGLRIPARVDTLCLHGDGEHALRFARLLRERLEALGV
EICAD

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=244, Percent_Identity=58.1967213114754, Blast_Score=273, Evalue=9e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3173_CHRVO (Q7NT87)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_902843.1
- ProteinModelPortal:   Q7NT87
- SMR:   Q7NT87
- GeneID:   2548955
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3173
- NMPDR:   fig|243365.1.peg.3173
- HOGENOM:   HBG482818
- OMA:   FADRRYT
- PhylomeDB:   Q7NT87
- ProtClustDB:   PRK05406
- BioCyc:   CVIO243365:CV_3173-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 25969; Mature: 25969

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDLNADLGEGCGDDAALLGLVSSANIACGWHAGDADTMRRTVLLALEKGVAIGAHPGF
CEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCC
PDRENFGRSEMRLPMEAARAGLLYQLGALDAIVRAEGGALRHVKPHGALYNQAAREPELA
CCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCHHHH
AVLARAIRDFNPALRAVGLAGGCFIDACRAEGLEVWQEGFADRGYRADGSLVPRGLPGAL
HHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
LQDDSAMLAQAEDMALRQTVAAVNGLRIPARVDTLCLHGDGEHALRFARLLRERLEALGV
HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECEEEEECCCHHHHHHHHHHHHHHHHCCC
EICAD
HHCCC
>Mature Secondary Structure
MKIDLNADLGEGCGDDAALLGLVSSANIACGWHAGDADTMRRTVLLALEKGVAIGAHPGF
CEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCC
PDRENFGRSEMRLPMEAARAGLLYQLGALDAIVRAEGGALRHVKPHGALYNQAAREPELA
CCHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCHHHH
AVLARAIRDFNPALRAVGLAGGCFIDACRAEGLEVWQEGFADRGYRADGSLVPRGLPGAL
HHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
LQDDSAMLAQAEDMALRQTVAAVNGLRIPARVDTLCLHGDGEHALRFARLLRERLEALGV
HCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECEEEEECCCHHHHHHHHHHHHHHHHCCC
EICAD
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782