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The map label for this gene is yfeR [H]

Identifier: 34498599

GI number: 34498599

Start: 3426623

End: 3427537

Strand: Reverse

Name: yfeR [H]

Synonym: CV_3144

Alternate gene names: 34498599

Gene position: 3427537-3426623 (Counterclockwise)

Preceding gene: 34498601

Following gene: 34498596

Centisome position: 72.14

GC content: 69.84

Gene sequence:

>915_bases
ATGAATTTCACGCTGAGGCAGTTGAGAGCCTTTTGCCGGGTGGCCGAATGCGCCAGCTTCAGCCGCGCCGGCGATGAGCT
GGGCCTGACCCAGCCGGCGGTCAGCCGCGCGGTACGCGAGCTGGAGCAGGCGCTGGAATTGCGGCTGCTGGACCGTACCA
CCCGCGAAGTGGCGCTGACCGCGGCCGGGGCGCGGCTGCTGCCCAAGCTTAGGCGCGCGCTGGCGGAGCTGGACGAGGTG
CTGGACGCCGCGCGCAAGGAGGGCGAGCAGGCGTTGGGCAGCGTGCACGTCGCCAGCAGCCCGACGCTGTCGGCCAGCTT
GATGCCGGCCATCGTGTCCGCCTGCCGCGAGCGCTATCCGCAGCTGGACCTGCATCTGCATGACCAGGTGCAAAGGCTGA
ACATCGCCGCTGTGCGCAATGGCGAGGCGGACTTCGGCCTGGTGGTGGAGCCGGAGGCCTGCGACGATCTGGAGCAGGAA
ACGGTGTTGATCGACGACTTCTGGCTGGTGTGCCGCGCCGACCACCGGCTGGCCGCAAGCGAGGCGGTGGCGTGGAAGCA
ATTGGACGGCGAGGCGCTGGTGCTGCTGGACGGCAGCTCCGGCAGCCGGCCGCTGATCGATCAACTGCTGCGCGATCATG
GCCTGAACTGCCCGGTGTCGCAGCAGCTGGGGCATTCCCACTCGGTGTTCCGCATGGTGGCGGCCGGCATCGGCGTCAGC
GTGTCGCCGGGGCTGGCCATGCCCTTGCCGGAAAACTGTGGCCTGACCGCGCGCCGCTTGTCGCCGCGCGCCAGCCGCCG
CATCGTCTTGATCCGCCGGCCCAACCGCACGTTGTCGCCTGCCGCGGAGCGCGTATGGCGGCTGGTGTTGGAGATGAGGG
GGCCATTGCAGACGCTGGCCCAGCGGGTCGCGTAG

Upstream 100 bases:

>100_bases
TGGGCATGGCATCGGGCGTTCGTTGTTCGATGCCGCTATTGAAGCGCGGATCAATTCAGAATACAAATGTATTTATCTGA
TCAATTAATAACTTATTTTT

Downstream 100 bases:

>100_bases
GCGGGGAGGTGCTGATCGGGGAGGACAGGCGCCCGGACGTCGCCCTATCGGCGCGTCCGGGCGATTTGGAGCTTACTGAG
CGGTGTTGGATGCCCAGACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNFTLRQLRAFCRVAECASFSRAGDELGLTQPAVSRAVRELEQALELRLLDRTTREVALTAAGARLLPKLRRALAELDEV
LDAARKEGEQALGSVHVASSPTLSASLMPAIVSACRERYPQLDLHLHDQVQRLNIAAVRNGEADFGLVVEPEACDDLEQE
TVLIDDFWLVCRADHRLAASEAVAWKQLDGEALVLLDGSSGSRPLIDQLLRDHGLNCPVSQQLGHSHSVFRMVAAGIGVS
VSPGLAMPLPENCGLTARRLSPRASRRIVLIRRPNRTLSPAAERVWRLVLEMRGPLQTLAQRVA

Sequences:

>Translated_304_residues
MNFTLRQLRAFCRVAECASFSRAGDELGLTQPAVSRAVRELEQALELRLLDRTTREVALTAAGARLLPKLRRALAELDEV
LDAARKEGEQALGSVHVASSPTLSASLMPAIVSACRERYPQLDLHLHDQVQRLNIAAVRNGEADFGLVVEPEACDDLEQE
TVLIDDFWLVCRADHRLAASEAVAWKQLDGEALVLLDGSSGSRPLIDQLLRDHGLNCPVSQQLGHSHSVFRMVAAGIGVS
VSPGLAMPLPENCGLTARRLSPRASRRIVLIRRPNRTLSPAAERVWRLVLEMRGPLQTLAQRVA
>Mature_304_residues
MNFTLRQLRAFCRVAECASFSRAGDELGLTQPAVSRAVRELEQALELRLLDRTTREVALTAAGARLLPKLRRALAELDEV
LDAARKEGEQALGSVHVASSPTLSASLMPAIVSACRERYPQLDLHLHDQVQRLNIAAVRNGEADFGLVVEPEACDDLEQE
TVLIDDFWLVCRADHRLAASEAVAWKQLDGEALVLLDGSSGSRPLIDQLLRDHGLNCPVSQQLGHSHSVFRMVAAGIGVS
VSPGLAMPLPENCGLTARRLSPRASRRIVLIRRPNRTLSPAAERVWRLVLEMRGPLQTLAQRVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=46.3667820069204, Blast_Score=256, Evalue=1e-69,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=33.4470989761092, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787879, Length=253, Percent_Identity=32.8063241106719, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1790399, Length=290, Percent_Identity=29.6551724137931, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI157672245, Length=287, Percent_Identity=30.3135888501742, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788481, Length=240, Percent_Identity=30, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789204, Length=278, Percent_Identity=28.0575539568345, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788887, Length=245, Percent_Identity=29.7959183673469, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787601, Length=173, Percent_Identity=30.635838150289, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI87082132, Length=254, Percent_Identity=28.3464566929134, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081904, Length=217, Percent_Identity=27.1889400921659, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=26.2096774193548, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788297, Length=302, Percent_Identity=25.4966887417219, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787128, Length=127, Percent_Identity=37.007874015748, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786401, Length=212, Percent_Identity=30.188679245283, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI2367136, Length=239, Percent_Identity=25.1046025104602, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=27.8688524590164, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789506, Length=285, Percent_Identity=22.4561403508772, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693193, Length=127, Percent_Identity=31.496062992126, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=119, Percent_Identity=32.7731092436975, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33315; Mature: 33315

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFTLRQLRAFCRVAECASFSRAGDELGLTQPAVSRAVRELEQALELRLLDRTTREVALT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGARLLPKLRRALAELDEVLDAARKEGEQALGSVHVASSPTLSASLMPAIVSACRERYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHCC
QLDLHLHDQVQRLNIAAVRNGEADFGLVVEPEACDDLEQETVLIDDFWLVCRADHRLAAS
CCCCHHHHHHHHHHHEEEECCCCCCCEEECCHHHCCCCCCEEEEEHHEEEHCCCCHHHHH
EAVAWKQLDGEALVLLDGSSGSRPLIDQLLRDHGLNCPVSQQLGHSHSVFRMVAAGIGVS
HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCC
VSPGLAMPLPENCGLTARRLSPRASRRIVLIRRPNRTLSPAAERVWRLVLEMRGPLQTLA
CCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHH
QRVA
HHCC
>Mature Secondary Structure
MNFTLRQLRAFCRVAECASFSRAGDELGLTQPAVSRAVRELEQALELRLLDRTTREVALT
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGARLLPKLRRALAELDEVLDAARKEGEQALGSVHVASSPTLSASLMPAIVSACRERYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHCC
QLDLHLHDQVQRLNIAAVRNGEADFGLVVEPEACDDLEQETVLIDDFWLVCRADHRLAAS
CCCCHHHHHHHHHHHEEEECCCCCCCEEECCHHHCCCCCCEEEEEHHEEEHCCCCHHHHH
EAVAWKQLDGEALVLLDGSSGSRPLIDQLLRDHGLNCPVSQQLGHSHSVFRMVAAGIGVS
HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCC
VSPGLAMPLPENCGLTARRLSPRASRRIVLIRRPNRTLSPAAERVWRLVLEMRGPLQTLA
CCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHH
QRVA
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]