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The map label for this gene is yciM [H]

Identifier: 34498498

GI number: 34498498

Start: 3321041

End: 3322198

Strand: Reverse

Name: yciM [H]

Synonym: CV_3043

Alternate gene names: 34498498

Gene position: 3322198-3321041 (Counterclockwise)

Preceding gene: 34498499

Following gene: 34498497

Centisome position: 69.93

GC content: 65.54

Gene sequence:

>1158_bases
TTGGAACTCGATTTGTGGTGGCTGCTGCTGTTTCCAGCCTTCTTCGGCCTGGGCTGGTTCGCGGCCCGGGTGGACATGCG
CACCGTGCTGAAGCAGGCGAAATCGGTGCCGATTTCCTATTTCCGCGGGCTGGACGCGCTGGTGGACGACAAGACCGACG
TCGCGGCGCAGGCCCTGGCGGAGGTGGCGCGCCAGCAGGGCTCGGCGCTTGAGTTGCAGCACATCCTGGGCAAGCTGTAC
CGCAAGCGCGGCGAGAACGACCGCGCGATCCGCCTGCATCAGCAGATGCTGGACTCGTCGGATCTGCCCGGCGAACAGCG
CGACCTGGTGCGCAACGAACTGGCGCAGGACTTCCGCAAGGCCGGGCTGGTCGATCGCGCTGAGGAAATCCTGCTCAAGC
TGTTGAACGGCAACATGGCATTGGCGGCGCGCCGCCAGCTGCTGGACATCTACCAGCAGGACCGCGACTGGAAGAAGGCG
ATCGAGACCGCGCGCGAGCTGCGCAGCGACGCGCACTCGTTCCAGCACGAGGTCGCGCAGTTCTACTGCGAACTGGCGCA
GGGCGAGCTGTACAAATCCGACCATAGCCAGGCTAGGCAGTACGTCGCCGAGGCGTTGGCCGCCAACCGCAAATGCGTGC
GCGCCAGCCTGATCCTGGGCGATATCGAGTTCGCTGAGGGCAATCTGGAGGCGGCCATCGCCGCCTGGCAGAGCATCGAG
AAGCAAAACTACGAATACCTGGCGATGGCGGCCGAGCGGCTGTTCGACGCCTACGAGAAACTGGGCCGGCCGCTGGAGGG
CATCGCGCTGCTGCGCGGCTATCAGCGCACCTTCCCGCAGCTGGAGCTGACCGACCTGCTGTACCAGAAGATCGCCACCT
ACGACGGCGAGGCCAAGGCTTTGGAAGGCGTGCGCGAAGCGGTTCACGCGCGTCCCAGCCTGGCCGGCGTGTACCGGATG
ATAGAGGCGCAGATGGACGAGCTGTCCCCGGAAGGGCGGATGGACGCCGAGGTGGCGCGCGCGCTGATCCTCAAGCATTC
GCAGCGCCTCAGCGTGCACCGCTGCAAGTGCTGCAATTTCCGCTCGCGAGCCTTCTTCTGGCACTGCCCGGCCTGCGGCG
AATGGGAAAGCTTCACCGCCAACCGTTCGGAAAACTGA

Upstream 100 bases:

>100_bases
CAGCAAGGTGGTCAGCGATCCCAGCGACGCGATCGCCGATTGAGCCTGTCTTCCGGGGCCATGACCTTGGCCCTGTTCTA
TCATCCCGAAAGGATTGCTG

Downstream 100 bases:

>100_bases
ATCACTCGGCGCGCGCTGTCTTGATGGCGCGCGCCGCGCAATATGGAATGATGGAGCATCGATGAATCCTCTGATCGCAC
AGGGCGAAAGCCGGACGACG

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MELDLWWLLLFPAFFGLGWFAARVDMRTVLKQAKSVPISYFRGLDALVDDKTDVAAQALAEVARQQGSALELQHILGKLY
RKRGENDRAIRLHQQMLDSSDLPGEQRDLVRNELAQDFRKAGLVDRAEEILLKLLNGNMALAARRQLLDIYQQDRDWKKA
IETARELRSDAHSFQHEVAQFYCELAQGELYKSDHSQARQYVAEALAANRKCVRASLILGDIEFAEGNLEAAIAAWQSIE
KQNYEYLAMAAERLFDAYEKLGRPLEGIALLRGYQRTFPQLELTDLLYQKIATYDGEAKALEGVREAVHARPSLAGVYRM
IEAQMDELSPEGRMDAEVARALILKHSQRLSVHRCKCCNFRSRAFFWHCPACGEWESFTANRSEN

Sequences:

>Translated_385_residues
MELDLWWLLLFPAFFGLGWFAARVDMRTVLKQAKSVPISYFRGLDALVDDKTDVAAQALAEVARQQGSALELQHILGKLY
RKRGENDRAIRLHQQMLDSSDLPGEQRDLVRNELAQDFRKAGLVDRAEEILLKLLNGNMALAARRQLLDIYQQDRDWKKA
IETARELRSDAHSFQHEVAQFYCELAQGELYKSDHSQARQYVAEALAANRKCVRASLILGDIEFAEGNLEAAIAAWQSIE
KQNYEYLAMAAERLFDAYEKLGRPLEGIALLRGYQRTFPQLELTDLLYQKIATYDGEAKALEGVREAVHARPSLAGVYRM
IEAQMDELSPEGRMDAEVARALILKHSQRLSVHRCKCCNFRSRAFFWHCPACGEWESFTANRSEN
>Mature_385_residues
MELDLWWLLLFPAFFGLGWFAARVDMRTVLKQAKSVPISYFRGLDALVDDKTDVAAQALAEVARQQGSALELQHILGKLY
RKRGENDRAIRLHQQMLDSSDLPGEQRDLVRNELAQDFRKAGLVDRAEEILLKLLNGNMALAARRQLLDIYQQDRDWKKA
IETARELRSDAHSFQHEVAQFYCELAQGELYKSDHSQARQYVAEALAANRKCVRASLILGDIEFAEGNLEAAIAAWQSIE
KQNYEYLAMAAERLFDAYEKLGRPLEGIALLRGYQRTFPQLELTDLLYQKIATYDGEAKALEGVREAVHARPSLAGVYRM
IEAQMDELSPEGRMDAEVARALILKHSQRLSVHRCKCCNFRSRAFFWHCPACGEWESFTANRSEN

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=379, Percent_Identity=28.7598944591029, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43988; Mature: 43988

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELDLWWLLLFPAFFGLGWFAARVDMRTVLKQAKSVPISYFRGLDALVDDKTDVAAQALA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHCCHHHHHHHHHH
EVARQQGSALELQHILGKLYRKRGENDRAIRLHQQMLDSSDLPGEQRDLVRNELAQDFRK
HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
AGLVDRAEEILLKLLNGNMALAARRQLLDIYQQDRDWKKAIETARELRSDAHSFQHEVAQ
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FYCELAQGELYKSDHSQARQYVAEALAANRKCVRASLILGDIEFAEGNLEAAIAAWQSIE
HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHH
KQNYEYLAMAAERLFDAYEKLGRPLEGIALLRGYQRTFPQLELTDLLYQKIATYDGEAKA
HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHH
LEGVREAVHARPSLAGVYRMIEAQMDELSPEGRMDAEVARALILKHSQRLSVHRCKCCNF
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
RSRAFFWHCPACGEWESFTANRSEN
CCCCEEEECCCCCCCHHCCCCCCCC
>Mature Secondary Structure
MELDLWWLLLFPAFFGLGWFAARVDMRTVLKQAKSVPISYFRGLDALVDDKTDVAAQALA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHCCHHHHHHHHHH
EVARQQGSALELQHILGKLYRKRGENDRAIRLHQQMLDSSDLPGEQRDLVRNELAQDFRK
HHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
AGLVDRAEEILLKLLNGNMALAARRQLLDIYQQDRDWKKAIETARELRSDAHSFQHEVAQ
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FYCELAQGELYKSDHSQARQYVAEALAANRKCVRASLILGDIEFAEGNLEAAIAAWQSIE
HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHH
KQNYEYLAMAAERLFDAYEKLGRPLEGIALLRGYQRTFPQLELTDLLYQKIATYDGEAKA
HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHH
LEGVREAVHARPSLAGVYRMIEAQMDELSPEGRMDAEVARALILKHSQRLSVHRCKCCNF
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
RSRAFFWHCPACGEWESFTANRSEN
CCCCEEEECCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]