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The map label for this gene is fliN [H]

Identifier: 34498457

GI number: 34498457

Start: 3277754

End: 3278104

Strand: Direct

Name: fliN [H]

Synonym: CV_3002

Alternate gene names: 34498457

Gene position: 3277754-3278104 (Clockwise)

Preceding gene: 34498456

Following gene: 34498458

Centisome position: 68.99

GC content: 66.95

Gene sequence:

>351_bases
ATGGAACTGAACCAAGACTTCGACCTGGACGGCATCCTGGACGGCCTGGACGCCGACGCGCCCTCCCCCGCGCCCGCCGA
ATCCGCGCCGGCCCCGCGCGACATGACACCTTTCCTGCGCAAGATCCCGGTGAAGCTGACGCTGGAAGTCGGCAGCGCCG
ACATCAGCCTGGCCGATCTGTGCCAGATAAGCGCCGGATCGGTGGTGGAGCTGGACAAGATCGCCGGCGAGCCGCTGGAC
ATCAAGGTCAACGGCACCGTGATCGGCCGCGCCGAGGTGGTGGTGTCCGGCGACAATTACGGCCTGCGCGTGGTGGAACT
CAACGACCTGCAGCTGGACAGCCTGGCCTGA

Upstream 100 bases:

>100_bases
CGCCCAGGGCTCGCCGCTGTTCCGCGCCCAGGTGGTGGAGCGCCAGGGCAAACTGTGCCTGTCCGGCTTCGCCGACATCG
AATAAACCAAGGAACCCGCA

Downstream 100 bases:

>100_bases
TGAAACGCGCACTTCCCCTGCTGCCGCTCGCCGCCGCTGGCCTGCTCGCGGCCGCGCCAGCCTGGGCCGAGCCGCTGAAG
CTGCTGTCCGCCAACGCCGG

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MELNQDFDLDGILDGLDADAPSPAPAESAPAPRDMTPFLRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLD
IKVNGTVIGRAEVVVSGDNYGLRVVELNDLQLDSLA

Sequences:

>Translated_116_residues
MELNQDFDLDGILDGLDADAPSPAPAESAPAPRDMTPFLRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLD
IKVNGTVIGRAEVVVSGDNYGLRVVELNDLQLDSLA
>Mature_116_residues
MELNQDFDLDGILDGLDADAPSPAPAESAPAPRDMTPFLRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLD
IKVNGTVIGRAEVVVSGDNYGLRVVELNDLQLDSLA

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=66, Percent_Identity=50, Blast_Score=73, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 12171; Mature: 12171

Theoretical pI: Translated: 3.79; Mature: 3.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNQDFDLDGILDGLDADAPSPAPAESAPAPRDMTPFLRKIPVKLTLEVGSADISLADL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEECCCCCCHHHH
CQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSGDNYGLRVVELNDLQLDSLA
EECCCCCEEEEHHHCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEECCEEECCCC
>Mature Secondary Structure
MELNQDFDLDGILDGLDADAPSPAPAESAPAPRDMTPFLRKIPVKLTLEVGSADISLADL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEECCCCCCHHHH
CQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSGDNYGLRVVELNDLQLDSLA
EECCCCCEEEEHHHCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEECCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]