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The map label for this gene is lafU [H]

Identifier: 34498443

GI number: 34498443

Start: 3265005

End: 3265991

Strand: Reverse

Name: lafU [H]

Synonym: CV_2988

Alternate gene names: 34498443

Gene position: 3265991-3265005 (Counterclockwise)

Preceding gene: 34498444

Following gene: 34498442

Centisome position: 68.74

GC content: 65.65

Gene sequence:

>987_bases
ATGGCCGGCTTGAAGAACAAGGGCGAGCACGACGGCGCGGTGATCAAGAAGGTGTCCCGCCGCAACGCGGAAGAGGGGCA
TGGCGGCGCATGGAAAGTGGCGTTCGCCGACTTCGTGCTGGCGCTGATGTGTCTGTTCCTGGTGCTGTGGGTGCTGGCCG
CGCGCGACCAGGAAAACCTGCAGCAATTGCTGACCACTTCCGGCGGCAGCCCGCTGCTGCAGGGCAACGGCAAACAGATC
GATCACATGGGCAATCCGCCCGGCACGCTGATTCCGCGCGATCCGATACCCGGCCAGGCCGGCAGCCAGGCGGCCAGCAA
GTCGGCGGTGCGGGACAGCGACAAGCGTGCCAGCGAGCAGCCGGAGCTGCCGCGCCGCAGCTACGACAGCGAAGCCGACC
TGCGCAAGCTGGCCGCGCAGCTGTCCGAGATGAGCCAGAAGGCCGGCTTGTCCAGCAATCTGCAGACGGTGATCACGCCC
TACGGCCTGCGCGTGACGTTGCACGACACCGACCAGCAAGGCATGTTCGAGCGCGGCAGCGCCATCGTCGAGCCCCGCTT
CCGCAGCCTGCTGCAGCAGATCGGTTCCATGCTTGGCGAAATCGACAACCGCCTGCTAGTGGTGGGACATACCGATGCCG
CGCAGTATCACAGGGCCGGCGGCTTCGCCGCGATGTCCAATTGGTCGCTGTCCAGCAACCGCGCGATGGCCGCCCGTCTG
CACATGATGCAGGGCGGTCTGGCCGCCGATTCCGTGCTGCAGGTGGTGGGCATGGCGGAGCGGGCACCGCTGGACAAGCA
GCATCCGCTGGGCGCGGTGAACCGCCGGATCGAGCTTTTGGTGCTGACTTCCGGCCAGGCTCAGGCGGTGGTGGCCATGT
TCGGCGCGAGGGGGGAGGGGCTCGCCAATGCGCCAGGTGTTGCGTTAGCGCTACCAAATGCAGAGGACCTTAAAACCCTG
CGAGAAAATACCATAAACATGCAGTAA

Upstream 100 bases:

>100_bases
GGCGATCGACGCCGGCCGCCGCCTGGTGCAGCTGAACACCAAGCCCAGCTTCTCGCAGCTGGAGTCGTGGATCAATGCGA
TGGAAGGCTTGGGTTAAGCG

Downstream 100 bases:

>100_bases
GTTGCTGAAAATATGCTCTCTTCCCATAAAAGCCTTGCCTTTGCAAGGCTTTTTTCTTGTGTGTTTTTCACATAAATTTT
AATCAAATTATTTACAATTA

Product: chemotaxis lafU protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MAGLKNKGEHDGAVIKKVSRRNAEEGHGGAWKVAFADFVLALMCLFLVLWVLAARDQENLQQLLTTSGGSPLLQGNGKQI
DHMGNPPGTLIPRDPIPGQAGSQAASKSAVRDSDKRASEQPELPRRSYDSEADLRKLAAQLSEMSQKAGLSSNLQTVITP
YGLRVTLHDTDQQGMFERGSAIVEPRFRSLLQQIGSMLGEIDNRLLVVGHTDAAQYHRAGGFAAMSNWSLSSNRAMAARL
HMMQGGLAADSVLQVVGMAERAPLDKQHPLGAVNRRIELLVLTSGQAQAVVAMFGARGEGLANAPGVALALPNAEDLKTL
RENTINMQ

Sequences:

>Translated_328_residues
MAGLKNKGEHDGAVIKKVSRRNAEEGHGGAWKVAFADFVLALMCLFLVLWVLAARDQENLQQLLTTSGGSPLLQGNGKQI
DHMGNPPGTLIPRDPIPGQAGSQAASKSAVRDSDKRASEQPELPRRSYDSEADLRKLAAQLSEMSQKAGLSSNLQTVITP
YGLRVTLHDTDQQGMFERGSAIVEPRFRSLLQQIGSMLGEIDNRLLVVGHTDAAQYHRAGGFAAMSNWSLSSNRAMAARL
HMMQGGLAADSVLQVVGMAERAPLDKQHPLGAVNRRIELLVLTSGQAQAVVAMFGARGEGLANAPGVALALPNAEDLKTL
RENTINMQ
>Mature_327_residues
AGLKNKGEHDGAVIKKVSRRNAEEGHGGAWKVAFADFVLALMCLFLVLWVLAARDQENLQQLLTTSGGSPLLQGNGKQID
HMGNPPGTLIPRDPIPGQAGSQAASKSAVRDSDKRASEQPELPRRSYDSEADLRKLAAQLSEMSQKAGLSSNLQTVITPY
GLRVTLHDTDQQGMFERGSAIVEPRFRSLLQQIGSMLGEIDNRLLVVGHTDAAQYHRAGGFAAMSNWSLSSNRAMAARLH
MMQGGLAADSVLQVVGMAERAPLDKQHPLGAVNRRIELLVLTSGQAQAVVAMFGARGEGLANAPGVALALPNAEDLKTLR
ENTINMQ

Specific function: Probable integral membrane protein required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788198, Length=287, Percent_Identity=35.5400696864112, Blast_Score=142, Evalue=4e-35,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 35156; Mature: 35024

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLKNKGEHDGAVIKKVSRRNAEEGHGGAWKVAFADFVLALMCLFLVLWVLAARDQENL
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QQLLTTSGGSPLLQGNGKQIDHMGNPPGTLIPRDPIPGQAGSQAASKSAVRDSDKRASEQ
HHHHHCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCC
PELPRRSYDSEADLRKLAAQLSEMSQKAGLSSNLQTVITPYGLRVTLHDTDQQGMFERGS
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCEEEEEECCCCCCHHHCCC
AIVEPRFRSLLQQIGSMLGEIDNRLLVVGHTDAAQYHRAGGFAAMSNWSLSSNRAMAARL
CEECHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCEEECCCCCCCCHHHHHHH
HMMQGGLAADSVLQVVGMAERAPLDKQHPLGAVNRRIELLVLTSGQAQAVVAMFGARGEG
HHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCEEEEEEEECCCHHHHHHHHCCCCCC
LANAPGVALALPNAEDLKTLRENTINMQ
CCCCCCEEEECCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AGLKNKGEHDGAVIKKVSRRNAEEGHGGAWKVAFADFVLALMCLFLVLWVLAARDQENL
CCCCCCCCCCHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QQLLTTSGGSPLLQGNGKQIDHMGNPPGTLIPRDPIPGQAGSQAASKSAVRDSDKRASEQ
HHHHHCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCC
PELPRRSYDSEADLRKLAAQLSEMSQKAGLSSNLQTVITPYGLRVTLHDTDQQGMFERGS
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCEEEEEECCCCCCHHHCCC
AIVEPRFRSLLQQIGSMLGEIDNRLLVVGHTDAAQYHRAGGFAAMSNWSLSSNRAMAARL
CEECHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCEEECCCCCCCCHHHHHHH
HMMQGGLAADSVLQVVGMAERAPLDKQHPLGAVNRRIELLVLTSGQAQAVVAMFGARGEG
HHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCEEEEEEEECCCHHHHHHHHCCCCCC
LANAPGVALALPNAEDLKTLRENTINMQ
CCCCCCEEEECCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739; 8501040 [H]