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The map label for this gene is ydhO [H]

Identifier: 34498421

GI number: 34498421

Start: 3244583

End: 3245392

Strand: Reverse

Name: ydhO [H]

Synonym: CV_2966

Alternate gene names: 34498421

Gene position: 3245392-3244583 (Counterclockwise)

Preceding gene: 34498424

Following gene: 34498420

Centisome position: 68.31

GC content: 64.44

Gene sequence:

>810_bases
GTGCTTTTCGCCGTCCCGCTTGGCTTTACACTACCGGCCCCGTCCGATAGAGTGCGGCCTATGAAATTGCAACTCCGCTT
ATCAGCGTTGGCGCTGGCGGGCTTCATGGTTTTTGCCCAGGCCGCGCCAGACAAGGCCACACCGGACAAGGCCCCGACCG
AGGGGAAAGCCGCCGCCGACAGTTCGGCGGCGGACAAATCGGAAGATCCCATCTCCAAGTACGCCGCTCCGCAAGAGGAT
GCGGTGGGCGATCTGCTTTTGCAAGCGATGAGCCTGCTGGGCGTCGCCTATCGCTTCGGCGGCAACACGCCGGACGACGG
CCTGGACTGCAGCGGCTTCATCCGTTACGTGTTCCAGAAATCGCTGCGGGTGAACCTGCCGCGCACCGCGGCCGAGATGG
CCCGCGTCGGCAAGTCGGTCGGCCGCGGCGAACTGATGCCGGGCGACCTGGTGTTCTTCAACACCCGCGGCTTCAATTAC
TCCCATGTCGGCATCTACATGGGCAACAACAAATTCATCCACGCGCCGCGAACGGGCAAGAACATCGAGGTGTCGAACCT
GTCGCAGAGCTACTGGACCGCGCGCTACAATGGCGCGCGCAGGGTCAATCGTAGCACTGCCGCGCAGTCGGCCGATACCT
CGGATGACGTCAGCGTGAAGAGCGCGGCCAAATCGTCGGCGGCGCCGGAGGCGGCCAAGTGCCGCAAGGGCAGGAAATGC
AAGGCCGCGGCCGCGCCCAAGGGCAAGAAGGGCGTCAAGGCGGAGAGGGCGGCCAAGTCGGCCGGCAAGAAGAAAAAGGG
TCGGCACTGA

Upstream 100 bases:

>100_bases
GCCGCTGGGCGAACTCTCCCAGTCCATGACGGATCAAAATTCCGCTGATTTCTCTTAACCGCGGTAAGTCCCGCATTGCA
ATCAAGGTTTCCCGAATCAT

Downstream 100 bases:

>100_bases
GCGGTCCGGCCGCGCGACGATGCCCGCTTTTCGCGGGCATCGCGTTTTCAGGAACAGGAATATGGCATTGAAAATCGAAA
TACCGGTATGGCGCGACCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MLFAVPLGFTLPAPSDRVRPMKLQLRLSALALAGFMVFAQAAPDKATPDKAPTEGKAAADSSAADKSEDPISKYAAPQED
AVGDLLLQAMSLLGVAYRFGGNTPDDGLDCSGFIRYVFQKSLRVNLPRTAAEMARVGKSVGRGELMPGDLVFFNTRGFNY
SHVGIYMGNNKFIHAPRTGKNIEVSNLSQSYWTARYNGARRVNRSTAAQSADTSDDVSVKSAAKSSAAPEAAKCRKGRKC
KAAAAPKGKKGVKAERAAKSAGKKKKGRH

Sequences:

>Translated_269_residues
MLFAVPLGFTLPAPSDRVRPMKLQLRLSALALAGFMVFAQAAPDKATPDKAPTEGKAAADSSAADKSEDPISKYAAPQED
AVGDLLLQAMSLLGVAYRFGGNTPDDGLDCSGFIRYVFQKSLRVNLPRTAAEMARVGKSVGRGELMPGDLVFFNTRGFNY
SHVGIYMGNNKFIHAPRTGKNIEVSNLSQSYWTARYNGARRVNRSTAAQSADTSDDVSVKSAAKSSAAPEAAKCRKGRKC
KAAAAPKGKKGVKAERAAKSAGKKKKGRH
>Mature_269_residues
MLFAVPLGFTLPAPSDRVRPMKLQLRLSALALAGFMVFAQAAPDKATPDKAPTEGKAAADSSAADKSEDPISKYAAPQED
AVGDLLLQAMSLLGVAYRFGGNTPDDGLDCSGFIRYVFQKSLRVNLPRTAAEMARVGKSVGRGELMPGDLVFFNTRGFNY
SHVGIYMGNNKFIHAPRTGKNIEVSNLSQSYWTARYNGARRVNRSTAAQSADTSDDVSVKSAAKSSAAPEAAKCRKGRKC
KAAAAPKGKKGVKAERAAKSAGKKKKGRH

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=116, Percent_Identity=46.551724137931, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1788501, Length=172, Percent_Identity=34.8837209302326, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786421, Length=113, Percent_Identity=41.5929203539823, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788001, Length=116, Percent_Identity=43.9655172413793, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 28628; Mature: 28628

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFAVPLGFTLPAPSDRVRPMKLQLRLSALALAGFMVFAQAAPDKATPDKAPTEGKAAAD
CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SSAADKSEDPISKYAAPQEDAVGDLLLQAMSLLGVAYRFGGNTPDDGLDCSGFIRYVFQK
CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
SLRVNLPRTAAEMARVGKSVGRGELMPGDLVFFNTRGFNYSHVGIYMGNNKFIHAPRTGK
HHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEECCCCCC
NIEVSNLSQSYWTARYNGARRVNRSTAAQSADTSDDVSVKSAAKSSAAPEAAKCRKGRKC
CEECCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCC
KAAAAPKGKKGVKAERAAKSAGKKKKGRH
CCCCCCCCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLFAVPLGFTLPAPSDRVRPMKLQLRLSALALAGFMVFAQAAPDKATPDKAPTEGKAAAD
CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SSAADKSEDPISKYAAPQEDAVGDLLLQAMSLLGVAYRFGGNTPDDGLDCSGFIRYVFQK
CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
SLRVNLPRTAAEMARVGKSVGRGELMPGDLVFFNTRGFNYSHVGIYMGNNKFIHAPRTGK
HHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCEEEECCCCCC
NIEVSNLSQSYWTARYNGARRVNRSTAAQSADTSDDVSVKSAAKSSAAPEAAKCRKGRKC
CEECCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCC
KAAAAPKGKKGVKAERAAKSAGKKKKGRH
CCCCCCCCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]