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The map label for this gene is amyD [H]

Identifier: 34498353

GI number: 34498353

Start: 3175537

End: 3176406

Strand: Direct

Name: amyD [H]

Synonym: CV_2898

Alternate gene names: 34498353

Gene position: 3175537-3176406 (Clockwise)

Preceding gene: 34498352

Following gene: 34498354

Centisome position: 66.84

GC content: 65.86

Gene sequence:

>870_bases
ATGACGCCGACCTCCACCCGCAACGCCTGGCTGTTCCTGTCACCCGCCCTGCTGCTGATGGGCGCGTTCACCTTCTGGCC
GCTGCTGTTCGGCGGCTACGTCGCCTTCACCCGCTACGACCTGGTCTCGCCGCCGCAATGGGTGGGCCTGGACAACTTCC
GCTACCTGCTGGACGACCCGGTGTTCATCCAGGCGCTCGGCAATTCGCTGCGCTACCTGCTGGTGGTGCCTGCCATCCAG
CTGGCCGGCATCGCGCTGGCGGTGCTGGCGAACCGGGCGCTGCCCGGCATCAAGTGGTTCCGCGCCGCCGTCTATCTGCC
GGTGATCACCACGGTGTCGGTGGTGGGCATCATGTGGAACTGGATGTACGCCGACTACGGCGTGCTCAACGGCGCGCTGC
ACTGGCTGGGATGGGTGGCGCGGGAGCATGATGTCGGTTTTCTCAGCGACGAGAACCTGGCGCTGTATTCGGTGATGTTC
GTCACCTTCTGGCGCGGCATCGGCTATTACATGGTGCTGTATCTCGCCGGGCTGCAGTCGATTCCGGCCGAGATGCAGGA
GGCCGCGCGGCTGGACGGCGCCAGTGCCTGGCAGCGCTTCTGGCGCATCACCCTGCCCATGCTCAAGCCCACCATCCTGT
TCTGCAGCCTGATCTCCACGCTGGACGCGATCAAGGCGTTCGAGGAGGTGCTGGTGATGACGCGCGGCGCGCCGATGAAC
TCCACCTACACCGCGCTCTACTACGCCTTCCATCAAGGCTTCAACCAGCTGGACTTCGGCCGCGGCAGCGCCGCCGGCCT
GGTGCTGACCCTGGTCTGCCTGCTGCTGGCCTGGCTGAATTTCAAGCTGATCCGCGCCGACCACCGCTGA

Upstream 100 bases:

>100_bases
GCCGCCGCCTTCTGGAACCGCCAGTTGAAGTAAGCCGCTTCCCTCCTCAGCCCCTCGCCGCGTCTCCCGGCAGGGGCGCT
TTTTCTTTCGCAGGCCAAGC

Downstream 100 bases:

>100_bases
GGACGACATGACCGCCATCGCCCTGAACCGCGCCGCGCCGCGCAAGCTGCTGCGCCGCCTGCCCGACTACCTGCTGCTGC
TCGCGCTGTCCTTCGCCTGC

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTPTSTRNAWLFLSPALLLMGAFTFWPLLFGGYVAFTRYDLVSPPQWVGLDNFRYLLDDPVFIQALGNSLRYLLVVPAIQ
LAGIALAVLANRALPGIKWFRAAVYLPVITTVSVVGIMWNWMYADYGVLNGALHWLGWVAREHDVGFLSDENLALYSVMF
VTFWRGIGYYMVLYLAGLQSIPAEMQEAARLDGASAWQRFWRITLPMLKPTILFCSLISTLDAIKAFEEVLVMTRGAPMN
STYTALYYAFHQGFNQLDFGRGSAAGLVLTLVCLLLAWLNFKLIRADHR

Sequences:

>Translated_289_residues
MTPTSTRNAWLFLSPALLLMGAFTFWPLLFGGYVAFTRYDLVSPPQWVGLDNFRYLLDDPVFIQALGNSLRYLLVVPAIQ
LAGIALAVLANRALPGIKWFRAAVYLPVITTVSVVGIMWNWMYADYGVLNGALHWLGWVAREHDVGFLSDENLALYSVMF
VTFWRGIGYYMVLYLAGLQSIPAEMQEAARLDGASAWQRFWRITLPMLKPTILFCSLISTLDAIKAFEEVLVMTRGAPMN
STYTALYYAFHQGFNQLDFGRGSAAGLVLTLVCLLLAWLNFKLIRADHR
>Mature_288_residues
TPTSTRNAWLFLSPALLLMGAFTFWPLLFGGYVAFTRYDLVSPPQWVGLDNFRYLLDDPVFIQALGNSLRYLLVVPAIQL
AGIALAVLANRALPGIKWFRAAVYLPVITTVSVVGIMWNWMYADYGVLNGALHWLGWVAREHDVGFLSDENLALYSVMFV
TFWRGIGYYMVLYLAGLQSIPAEMQEAARLDGASAWQRFWRITLPMLKPTILFCSLISTLDAIKAFEEVLVMTRGAPMNS
TYTALYYAFHQGFNQLDFGRGSAAGLVLTLVCLLLAWLNFKLIRADHR

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789861, Length=287, Percent_Identity=25.7839721254355, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787570, Length=271, Percent_Identity=26.9372693726937, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32557; Mature: 32425

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEHEECCCC
>Mature Secondary Structure 
TPTSTRNAWLFLSPALLLMGAFTFWPLLFGGYVAFTRYDLVSPPQWVGLDNFRYLLDDP
CCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCH
VFIQALGNSLRYLLVVPAIQLAGIALAVLANRALPGIKWFRAAVYLPVITTVSVVGIMWN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WMYADYGVLNGALHWLGWVAREHDVGFLSDENLALYSVMFVTFWRGIGYYMVLYLAGLQS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPAEMQEAARLDGASAWQRFWRITLPMLKPTILFCSLISTLDAIKAFEEVLVMTRGAPMN
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
STYTALYYAFHQGFNQLDFGRGSAAGLVLTLVCLLLAWLNFKLIRADHR
CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]