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The map label for this gene is ugpB [C]

Identifier: 34498352

GI number: 34498352

Start: 3174213

End: 3175469

Strand: Direct

Name: ugpB [C]

Synonym: CV_2897

Alternate gene names: 34498352

Gene position: 3174213-3175469 (Clockwise)

Preceding gene: 34498351

Following gene: 34498353

Centisome position: 66.81

GC content: 66.03

Gene sequence:

>1257_bases
ATGAAACCGTTCCGCCCCGCGCTGGCCGCGCTCGCGCTGCTGGCCTGCAGCCTGTCCGCCCATGCCGAAAAAGTCCGGCT
GGAATTCTGGACCGATTCGCTGAAGCCCACCTTCGACGGCTACTTCGCCAACGTCAAGAAAACCTACGAGGCGCAGCATC
CTGATGTGGAAGTGCAATGGGTGGACGTGTTCAACGACAACTTCGAAACCAAGCTCAACGCCGCCATCGCCGCCGGCCGG
CCGCCGGCCCTGGTCAACCACGACGTGCCGCGTCTGTTCAAATACGCGCAGAAAGGCACGCTGATCCCGCTGGACGCGGC
GCTGGGCGCGGACCAGGCCGCTTATCTGCCCAACGCGCTGGCCGACCTCAGCTTCGGCGGCAAGCTGTACGGCCTGCCCT
GGTACAACAACATCAACGTGCTGGTGATCAACGGCGAGCTGTTCAAGAAAGCCGGCCTGGACCCGAAACAACCGGTCGCA
AGCCTGGACGAGGAGCTGCGCCTGGCCAAGATCGTCAAGGCCAGGACCGGCGTGCCCGGCCTGCTGCCGCAACTGGGCCA
GATAGACGGCATCATGCTGGGCCAGGGCCTGCCGCTGATCCAGAACGGCAAAGCCGTATTCAACAGCCCCAGGCATGCCG
CGCTGATCCGCAAGTTCGCCGACGCCTACAAGGCCGGCGCGCTGGCCAGAGACAGTCTGTTCGCCGACGACAACTACCAG
GCCAGCATCAAGCTGTACAACAGCGGCCGGCTGGCGATGATGGAAACCGCGCCGACCTCCGCCCAGCGCACCCAGAGCGA
CGCGCGCAACATCTATGCCGCCACCGTGGTGCAGCCGGCGCCGCTGGGACCGACCAAGATCGCCCAGGGCGGCTATCTGT
TCAGCTGGTCGGTATCCAAGGGCCTGCCGGCGCGCACCCAGCAGGAGGCCGTCAAGTTCGCCAGATTCCTCACCGGCGAC
GCCCAGCAGCTGGCCTTCGCCAAGGTGACCGGGGCCACCTTCCCCTCCACCCGGCAGGCGCTGGCCGACAGCTACTTCGT
CAAGACATCGGCCGGCGGCGGCGCGGTAGAAAGCTCGCGCATCGAGGGCGCCAAGGTGGCGCGCAGCATCCGCACCCTGG
TGCTGACCGGCGTGCCCAATGTCGGCGACCTGAAAAAGAACCTGGTCGACAACGTGGAGGCCGCCGTCACCGGCAAGAAG
GACGCGCAGAAGGCGCTGGACGACGCCGCCGCCTTCTGGAACCGCCAGTTGAAGTAA

Upstream 100 bases:

>100_bases
GCCGGGCTTCCGCCAGCGGCTGGTCGCGCCGCAAGGCGACTCCGCCCAGGGCGCGCTGCTGCTGTTGCAGCGGCCGAGCA
CACGATAACAGGAGAAGACA

Downstream 100 bases:

>100_bases
GCCGCTTCCCTCCTCAGCCCCTCGCCGCGTCTCCCGGCAGGGGCGCTTTTTCTTTCGCAGGCCAAGCATGACGCCGACCT
CCACCCGCAACGCCTGGCTG

Product: sugar ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MKPFRPALAALALLACSLSAHAEKVRLEFWTDSLKPTFDGYFANVKKTYEAQHPDVEVQWVDVFNDNFETKLNAAIAAGR
PPALVNHDVPRLFKYAQKGTLIPLDAALGADQAAYLPNALADLSFGGKLYGLPWYNNINVLVINGELFKKAGLDPKQPVA
SLDEELRLAKIVKARTGVPGLLPQLGQIDGIMLGQGLPLIQNGKAVFNSPRHAALIRKFADAYKAGALARDSLFADDNYQ
ASIKLYNSGRLAMMETAPTSAQRTQSDARNIYAATVVQPAPLGPTKIAQGGYLFSWSVSKGLPARTQQEAVKFARFLTGD
AQQLAFAKVTGATFPSTRQALADSYFVKTSAGGGAVESSRIEGAKVARSIRTLVLTGVPNVGDLKKNLVDNVEAAVTGKK
DAQKALDDAAAFWNRQLK

Sequences:

>Translated_418_residues
MKPFRPALAALALLACSLSAHAEKVRLEFWTDSLKPTFDGYFANVKKTYEAQHPDVEVQWVDVFNDNFETKLNAAIAAGR
PPALVNHDVPRLFKYAQKGTLIPLDAALGADQAAYLPNALADLSFGGKLYGLPWYNNINVLVINGELFKKAGLDPKQPVA
SLDEELRLAKIVKARTGVPGLLPQLGQIDGIMLGQGLPLIQNGKAVFNSPRHAALIRKFADAYKAGALARDSLFADDNYQ
ASIKLYNSGRLAMMETAPTSAQRTQSDARNIYAATVVQPAPLGPTKIAQGGYLFSWSVSKGLPARTQQEAVKFARFLTGD
AQQLAFAKVTGATFPSTRQALADSYFVKTSAGGGAVESSRIEGAKVARSIRTLVLTGVPNVGDLKKNLVDNVEAAVTGKK
DAQKALDDAAAFWNRQLK
>Mature_418_residues
MKPFRPALAALALLACSLSAHAEKVRLEFWTDSLKPTFDGYFANVKKTYEAQHPDVEVQWVDVFNDNFETKLNAAIAAGR
PPALVNHDVPRLFKYAQKGTLIPLDAALGADQAAYLPNALADLSFGGKLYGLPWYNNINVLVINGELFKKAGLDPKQPVA
SLDEELRLAKIVKARTGVPGLLPQLGQIDGIMLGQGLPLIQNGKAVFNSPRHAALIRKFADAYKAGALARDSLFADDNYQ
ASIKLYNSGRLAMMETAPTSAQRTQSDARNIYAATVVQPAPLGPTKIAQGGYLFSWSVSKGLPARTQQEAVKFARFLTGD
AQQLAFAKVTGATFPSTRQALADSYFVKTSAGGGAVESSRIEGAKVARSIRTLVLTGVPNVGDLKKNLVDNVEAAVTGKK
DAQKALDDAAAFWNRQLK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 44986; Mature: 44986

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPFRPALAALALLACSLSAHAEKVRLEFWTDSLKPTFDGYFANVKKTYEAQHPDVEVQW
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
VDVFNDNFETKLNAAIAAGRPPALVNHDVPRLFKYAQKGTLIPLDAALGADQAAYLPNAL
EEEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCEEEEHHHCCCCCHHHCCHHH
ADLSFGGKLYGLPWYNNINVLVINGELFKKAGLDPKQPVASLDEELRLAKIVKARTGVPG
HHCCCCCEEEECCEECCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
LLPQLGQIDGIMLGQGLPLIQNGKAVFNSPRHAALIRKFADAYKAGALARDSLFADDNYQ
HHHHHCCCCCEEECCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHCCHHHCCEECCCCCE
ASIKLYNSGRLAMMETAPTSAQRTQSDARNIYAATVVQPAPLGPTKIAQGGYLFSWSVSK
EEEEEECCCCEEEEECCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCEEEEEECCC
GLPARTQQEAVKFARFLTGDAQQLAFAKVTGATFPSTRQALADSYFVKTSAGGGAVESSR
CCCCCCHHHHHHHHHHHCCCHHHHEEEEECCCCCCHHHHHHHHCEEEEECCCCCCCCCCC
IEGAKVARSIRTLVLTGVPNVGDLKKNLVDNVEAAVTGKKDAQKALDDAAAFWNRQLK
CCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKPFRPALAALALLACSLSAHAEKVRLEFWTDSLKPTFDGYFANVKKTYEAQHPDVEVQW
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
VDVFNDNFETKLNAAIAAGRPPALVNHDVPRLFKYAQKGTLIPLDAALGADQAAYLPNAL
EEEECCCCCHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCEEEEHHHCCCCCHHHCCHHH
ADLSFGGKLYGLPWYNNINVLVINGELFKKAGLDPKQPVASLDEELRLAKIVKARTGVPG
HHCCCCCEEEECCEECCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
LLPQLGQIDGIMLGQGLPLIQNGKAVFNSPRHAALIRKFADAYKAGALARDSLFADDNYQ
HHHHHCCCCCEEECCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHCCHHHCCEECCCCCE
ASIKLYNSGRLAMMETAPTSAQRTQSDARNIYAATVVQPAPLGPTKIAQGGYLFSWSVSK
EEEEEECCCCEEEEECCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCEEEEEECCC
GLPARTQQEAVKFARFLTGDAQQLAFAKVTGATFPSTRQALADSYFVKTSAGGGAVESSR
CCCCCCHHHHHHHHHHHCCCHHHHEEEEECCCCCCHHHHHHHHCEEEEECCCCCCCCCCC
IEGAKVARSIRTLVLTGVPNVGDLKKNLVDNVEAAVTGKKDAQKALDDAAAFWNRQLK
CCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA