| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498349
Identifier: 34498349
GI number: 34498349
Start: 3170223
End: 3171911
Strand: Reverse
Name: 34498349
Synonym: CV_2894
Alternate gene names: NA
Gene position: 3171911-3170223 (Counterclockwise)
Preceding gene: 34498350
Following gene: 34498348
Centisome position: 66.76
GC content: 68.56
Gene sequence:
>1689_bases ATGCGGTTCCTGTTCAATCATCTGGGCTTCGAGAGCGCGGCGGCCAAGCCGGCGCTGCTGCAGGGGGAGGCCGGCGCGGC GGTGGACGGCGCGGCGGTGCTGGATGCCGCCGGCAAGGTGGTCTTGCGCGTCCCCTTGCGCGCGCTGGGCGGCGTGAACG GCTGGCGCGATTGGCATTACTGGCGCGCCGATCTCGACGCGCTGCGCCAGCCGGGCCGCTACCAGCTATGGCTGGAAGGC AGCGCGCCGCCGCTGGTGTCGGCGCCGTTCGAGGTGGCGGACAGCCTTTACGGGCCGGCGTTGTTGTCCGACCTGTTGTT CTATTTCAAGTCCCAGCGTTGCAGCGGCCTGTACGACCTGGCCGACCGGTCCGCGCCGGAAGAGGGCGGCGGGGCGCGGC GCGACGCGCACGGCGGCTGGTTCGACGCCTCCGGCGACTGTTCCAAGTATCTGAGCCACCTGTCCTATACCAATTATCTG AACCCCCAGCAGACGCCGCTGCTGGTCTGGAGCCTGATCCAGACGCGCCAGGCGTTGCCGCCGCAGGGCAAGTGGTTTGA CGAGCGTTTGGTGGACGAGGCGCTGCATGGCGCCGATTTCCTGCTGCGCATGCAGCACGAGTCGGGTTTTTTCTACCAGA CCCTGTTCGACGGCTGGAGCAAGGATGAGAAGCGGCGCAGCCTGTGCGCCTATTCCACCCAGCAGGGACTTCGCTCGCGG GCTTTCCAGGCCGGCTGGCGCCAGGGCGGCGGCATGGCGGTGGCGGCGCTGGCGGCGGCGTCAAAGCTGCCCCGCGATGG CGAGAGCGAACGCGCCGAATACCTGGCGGCCGCGCGCCAGGGTTTCGCCCACTTGCAGGAGCACGGCGGCTCATATCTGG CGGACGGCGAGGAAAACCTGATCGACGACTACTGCGCGCTGCTGGCGGCCTGCGAGTTGTACGCGGCCTGCGGCGACAGC GATTACGCCGATGCCGCCGCCGAGCGCGCGGCTTGCCTGCTGGAACGCCAGCATGCCGACGGCTGGTTCTGGCTGGACAA CAGCCGAAGCCGCAGTTTCTGCCACGCGTCGGACGCGGGGCTGCCTTATTTCGCGCTGGCGCGCTACCTGGAGGTATTGC CGGACGGCCCCGGCGCGGCGGCTGTCGAGCAAGGGTGGCTGAGGGGGCTGCAAGGCGAGCTCGCCCGCAGCGCGGATGGC AATCCTTTCGGCTATCCGCGCCAATGGGTGAGGCAGCCGGGGGAAAGCGAGGGCGCGCGCTTCTTCATGCCGCAGCGCAA TGCCAGCGGCTATTGGTGGCAGGGCGAAAACGCGAGGCTGGGCTCGCTGGCGGCCGCCGCCTGGAAGGGCGCTGCGCGCT GGCCAGAGCTGGCCGGCGGCCTGGACGCCTACGCGCAGTCGGCGGTGGACTGGGTGTTGGGCCGCAATCCGTTCGACGTC TGCATGTGGCAGGGGCATGGCCGCAACAACCCGCATTACGAGCCCGGGTATTGCAATGCGCCGGGCGGGGTCTGCAACGG CATCACCGCCGAGCCGGGAAGCGACGGCGGCATAGCCTTCCTGCTGCCGGAGGAGACCGACATCAGCCAGTCATGGCGCT GGAGCGAGCAGTGGCTGCCGCATGGCGCGTGGTTCTTGATGGCTTTGGCTCAGAGGCATGGTTTTAAAATTTGCCATGAG GTGCAATGA
Upstream 100 bases:
>100_bases TGGTATTCGATGAATTCAACCCGCAATACGAGGTGTTGTTGAAGAACGGCCGGCGCTGAGCGTTCGGCGCGCGTGATCAG ACTGGAGGGCGACGATGGCG
Downstream 100 bases:
>100_bases AGTTTTGGAAAATGCCAAAATTATTTAATTTTTTGAAATAAATTTATTTGACATTACCTTCTTCATGCTTAATCATGCGG AGAGCGCTTGCTTGGCAGGT
Product: endoglucanase-like protein
Products: NA
Alternate protein names: Endoglucanase-Related Protein; Endoglucanase-Like Protein; Chitobiase; Glycoside Hydrolase Family Protein; Glucosamine-Link Cellobiase; Endoglucanase; Beta-Glycosidase-Like Protein; Glycosy Hydrolase Family Protein
Number of amino acids: Translated: 562; Mature: 562
Protein sequence:
>562_residues MRFLFNHLGFESAAAKPALLQGEAGAAVDGAAVLDAAGKVVLRVPLRALGGVNGWRDWHYWRADLDALRQPGRYQLWLEG SAPPLVSAPFEVADSLYGPALLSDLLFYFKSQRCSGLYDLADRSAPEEGGGARRDAHGGWFDASGDCSKYLSHLSYTNYL NPQQTPLLVWSLIQTRQALPPQGKWFDERLVDEALHGADFLLRMQHESGFFYQTLFDGWSKDEKRRSLCAYSTQQGLRSR AFQAGWRQGGGMAVAALAAASKLPRDGESERAEYLAAARQGFAHLQEHGGSYLADGEENLIDDYCALLAACELYAACGDS DYADAAAERAACLLERQHADGWFWLDNSRSRSFCHASDAGLPYFALARYLEVLPDGPGAAAVEQGWLRGLQGELARSADG NPFGYPRQWVRQPGESEGARFFMPQRNASGYWWQGENARLGSLAAAAWKGAARWPELAGGLDAYAQSAVDWVLGRNPFDV CMWQGHGRNNPHYEPGYCNAPGGVCNGITAEPGSDGGIAFLLPEETDISQSWRWSEQWLPHGAWFLMALAQRHGFKICHE VQ
Sequences:
>Translated_562_residues MRFLFNHLGFESAAAKPALLQGEAGAAVDGAAVLDAAGKVVLRVPLRALGGVNGWRDWHYWRADLDALRQPGRYQLWLEG SAPPLVSAPFEVADSLYGPALLSDLLFYFKSQRCSGLYDLADRSAPEEGGGARRDAHGGWFDASGDCSKYLSHLSYTNYL NPQQTPLLVWSLIQTRQALPPQGKWFDERLVDEALHGADFLLRMQHESGFFYQTLFDGWSKDEKRRSLCAYSTQQGLRSR AFQAGWRQGGGMAVAALAAASKLPRDGESERAEYLAAARQGFAHLQEHGGSYLADGEENLIDDYCALLAACELYAACGDS DYADAAAERAACLLERQHADGWFWLDNSRSRSFCHASDAGLPYFALARYLEVLPDGPGAAAVEQGWLRGLQGELARSADG NPFGYPRQWVRQPGESEGARFFMPQRNASGYWWQGENARLGSLAAAAWKGAARWPELAGGLDAYAQSAVDWVLGRNPFDV CMWQGHGRNNPHYEPGYCNAPGGVCNGITAEPGSDGGIAFLLPEETDISQSWRWSEQWLPHGAWFLMALAQRHGFKICHE VQ >Mature_562_residues MRFLFNHLGFESAAAKPALLQGEAGAAVDGAAVLDAAGKVVLRVPLRALGGVNGWRDWHYWRADLDALRQPGRYQLWLEG SAPPLVSAPFEVADSLYGPALLSDLLFYFKSQRCSGLYDLADRSAPEEGGGARRDAHGGWFDASGDCSKYLSHLSYTNYL NPQQTPLLVWSLIQTRQALPPQGKWFDERLVDEALHGADFLLRMQHESGFFYQTLFDGWSKDEKRRSLCAYSTQQGLRSR AFQAGWRQGGGMAVAALAAASKLPRDGESERAEYLAAARQGFAHLQEHGGSYLADGEENLIDDYCALLAACELYAACGDS DYADAAAERAACLLERQHADGWFWLDNSRSRSFCHASDAGLPYFALARYLEVLPDGPGAAAVEQGWLRGLQGELARSADG NPFGYPRQWVRQPGESEGARFFMPQRNASGYWWQGENARLGSLAAAAWKGAARWPELAGGLDAYAQSAVDWVLGRNPFDV CMWQGHGRNNPHYEPGYCNAPGGVCNGITAEPGSDGGIAFLLPEETDISQSWRWSEQWLPHGAWFLMALAQRHGFKICHE VQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61825; Mature: 61825
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFLFNHLGFESAAAKPALLQGEAGAAVDGAAVLDAAGKVVLRVPLRALGGVNGWRDWHY CCHHHHHCCCHHHCCCCCEEECCCCCCCCCHHHHHHCCCEEEEECHHHHCCCCCCCCHHH WRADLDALRQPGRYQLWLEGSAPPLVSAPFEVADSLYGPALLSDLLFYFKSQRCSGLYDL HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHH ADRSAPEEGGGARRDAHGGWFDASGDCSKYLSHLSYTNYLNPQQTPLLVWSLIQTRQALP HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC PQGKWFDERLVDEALHGADFLLRMQHESGFFYQTLFDGWSKDEKRRSLCAYSTQQGLRSR CCCCCHHHHHHHHHHCCCHHEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AFQAGWRQGGGMAVAALAAASKLPRDGESERAEYLAAARQGFAHLQEHGGSYLADGEENL HHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH IDDYCALLAACELYAACGDSDYADAAAERAACLLERQHADGWFWLDNSRSRSFCHASDAG HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC LPYFALARYLEVLPDGPGAAAVEQGWLRGLQGELARSADGNPFGYPRQWVRQPGESEGAR CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCE FFMPQRNASGYWWQGENARLGSLAAAAWKGAARWPELAGGLDAYAQSAVDWVLGRNPFDV EEEECCCCCCCEECCCCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHCCCCHHE CMWQGHGRNNPHYEPGYCNAPGGVCNGITAEPGSDGGIAFLLPEETDISQSWRWSEQWLP EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHCC HGAWFLMALAQRHGFKICHEVQ CHHHHHHHHHHHCCCCHHHCCC >Mature Secondary Structure MRFLFNHLGFESAAAKPALLQGEAGAAVDGAAVLDAAGKVVLRVPLRALGGVNGWRDWHY CCHHHHHCCCHHHCCCCCEEECCCCCCCCCHHHHHHCCCEEEEECHHHHCCCCCCCCHHH WRADLDALRQPGRYQLWLEGSAPPLVSAPFEVADSLYGPALLSDLLFYFKSQRCSGLYDL HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHH ADRSAPEEGGGARRDAHGGWFDASGDCSKYLSHLSYTNYLNPQQTPLLVWSLIQTRQALP HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC PQGKWFDERLVDEALHGADFLLRMQHESGFFYQTLFDGWSKDEKRRSLCAYSTQQGLRSR CCCCCHHHHHHHHHHCCCHHEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AFQAGWRQGGGMAVAALAAASKLPRDGESERAEYLAAARQGFAHLQEHGGSYLADGEENL HHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH IDDYCALLAACELYAACGDSDYADAAAERAACLLERQHADGWFWLDNSRSRSFCHASDAG HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC LPYFALARYLEVLPDGPGAAAVEQGWLRGLQGELARSADGNPFGYPRQWVRQPGESEGAR CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCE FFMPQRNASGYWWQGENARLGSLAAAAWKGAARWPELAGGLDAYAQSAVDWVLGRNPFDV EEEECCCCCCCEECCCCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHCCCCHHE CMWQGHGRNNPHYEPGYCNAPGGVCNGITAEPGSDGGIAFLLPEETDISQSWRWSEQWLP EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHCC HGAWFLMALAQRHGFKICHEVQ CHHHHHHHHHHHCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA