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The map label for this gene is flgD1 [H]

Identifier: 34498341

GI number: 34498341

Start: 3162709

End: 3163383

Strand: Reverse

Name: flgD1 [H]

Synonym: CV_2886

Alternate gene names: 34498341

Gene position: 3163383-3162709 (Counterclockwise)

Preceding gene: 34498342

Following gene: 34498340

Centisome position: 66.58

GC content: 64.3

Gene sequence:

>675_bases
CTGGCGCCGGGCGCCTCCAGCATGCAGGCGGCGAATGGCGGCGCGTCCGGCAATACAGGCAGCGCCACCAGCGCGCAGAG
CCTGCAGAACAATTTTCTGACGCTGCTGACGGCGCAGTTGAATGCGCAGGATCCGCTCAATCCGATGGACAACAGCCAGC
TGACCAGCCAGATGGCGCAGATCAGCCAGGTTTCGGGCCTGCAGTCGCTGAATCTGACCATGCAGCAACTGGTCGCTTCC
CAGAACGCGTCGCAATCGATGATGGCGACCGGCATGATAGGCAACAACGTGCTGGTCGCCGGCAACACGCTGGCGTCGCC
GGCCGCGGGGCAGACGACCCAGGGCGGCGTCATGCTCAGCGGCCCGGCCTCGTCCTATCAGGTCAGCGTGCTGGACAAGA
ACGGCAATGTCGTCGATACCGTAACCGTCGCCAATCCCAGCAAGGGCCTGAATACCTTCAACTGGGACGGGACGGATGGG
AAGGGCCATGCCTTGCCCGCCGGGAATTACACTTTCCAGGTCAAGGTGACGCAGGCCAGCGCGGGCGGCAACACGACCGC
GACCGCGTACAACAACCAGAAGGTCCAGGCGGTGTCCTGGCTCAACGGCTCGCCGATGTTGGTGTTGCCGGGCAATCAGT
CCGTGCCGCTGTCGGCCGTGGCGCAGATGTCTTGA

Upstream 100 bases:

>100_bases
TGCTGCAGAAAACCCTGCAGCTGGGCCAGTAATTTAAGGAGCGACAGTCATGGCCTCTGCAGCTGGAACCACTTTCAATT
TCAACTCGCTGAACAATCAG

Downstream 100 bases:

>100_bases
TCGTCGCTTGACGCAAGGTTGAATGAAGGAGCGGTAAAATGGGTTTTCAACAAGGCCTCAGCGGAATCAACGCGGCGTCG
GTCCAGCTGGATTCGATCGG

Product: basal-body rod modification protein FlgD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MAPGASSMQAANGGASGNTGSATSAQSLQNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQISQVSGLQSLNLTMQQLVAS
QNASQSMMATGMIGNNVLVAGNTLASPAAGQTTQGGVMLSGPASSYQVSVLDKNGNVVDTVTVANPSKGLNTFNWDGTDG
KGHALPAGNYTFQVKVTQASAGGNTTATAYNNQKVQAVSWLNGSPMLVLPGNQSVPLSAVAQMS

Sequences:

>Translated_224_residues
MAPGASSMQAANGGASGNTGSATSAQSLQNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQISQVSGLQSLNLTMQQLVAS
QNASQSMMATGMIGNNVLVAGNTLASPAAGQTTQGGVMLSGPASSYQVSVLDKNGNVVDTVTVANPSKGLNTFNWDGTDG
KGHALPAGNYTFQVKVTQASAGGNTTATAYNNQKVQAVSWLNGSPMLVLPGNQSVPLSAVAQMS
>Mature_223_residues
APGASSMQAANGGASGNTGSATSAQSLQNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQISQVSGLQSLNLTMQQLVASQ
NASQSMMATGMIGNNVLVAGNTLASPAAGQTTQGGVMLSGPASSYQVSVLDKNGNVVDTVTVANPSKGLNTFNWDGTDGK
GHALPAGNYTFQVKVTQASAGGNTTATAYNNQKVQAVSWLNGSPMLVLPGNQSVPLSAVAQMS

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=165, Percent_Identity=41.8181818181818, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 22650; Mature: 22519

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPGASSMQAANGGASGNTGSATSAQSLQNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
ISQVSGLQSLNLTMQQLVASQNASQSMMATGMIGNNVLVAGNTLASPAAGQTTQGGVMLS
HHHHCCCHHHHHHHHHHHHHCCCCHHEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEE
GPASSYQVSVLDKNGNVVDTVTVANPSKGLNTFNWDGTDGKGHALPAGNYTFQVKVTQAS
CCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEEEC
AGGNTTATAYNNQKVQAVSWLNGSPMLVLPGNQSVPLSAVAQMS
CCCCEEEEEECCCEEEEEEECCCCCEEEECCCCCCCHHHHEECC
>Mature Secondary Structure 
APGASSMQAANGGASGNTGSATSAQSLQNNFLTLLTAQLNAQDPLNPMDNSQLTSQMAQ
CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
ISQVSGLQSLNLTMQQLVASQNASQSMMATGMIGNNVLVAGNTLASPAAGQTTQGGVMLS
HHHHCCCHHHHHHHHHHHHHCCCCHHEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEE
GPASSYQVSVLDKNGNVVDTVTVANPSKGLNTFNWDGTDGKGHALPAGNYTFQVKVTQAS
CCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEEEC
AGGNTTATAYNNQKVQAVSWLNGSPMLVLPGNQSVPLSAVAQMS
CCCCEEEEEECCCEEEEEEECCCCCEEEECCCCCCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]