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The map label for this gene is allS [H]

Identifier: 34498137

GI number: 34498137

Start: 2904422

End: 2905294

Strand: Direct

Name: allS [H]

Synonym: CV_2682

Alternate gene names: 34498137

Gene position: 2904422-2905294 (Clockwise)

Preceding gene: 34498128

Following gene: 34498139

Centisome position: 61.13

GC content: 67.93

Gene sequence:

>873_bases
ATGACTACCTCAATCGACACCCTCTCCGCCTTCGTCTACGCCGCCGACCTCGGCTCTTTCTCCGCTGCCGCAAGGCGCCT
GGGCAAGAGCCAGTCCACCATCAGCGAGGCCATCGCCAACCTGGAAATCGACTTGGGAAGCAGCCTGTTCGACCGGGGCA
CCCGCGCGCCCACCCTGACGCCCGCCGGGCGGCTGCTGTTGCCCCAAGCGCGGCAGATCATGGCCGCCAGCCAGGATCTG
CGCAGGCAGGCCGCCCAGCTGAACGCCGGCGTGGAAACCCGCCTCACCATCGTGCTGTCCGACACTTTCCAGTCGCGCAC
GCTGGAAAGCGTCGCCTGCCGGCTGGAAGAACGCTATCCCTTGCTGGAGCTGGAATGCCTGGTCGGCGAGCAAGAGGACG
TGCTGGACCTGATCCTGTCCGGCCGCGCGCAACTGGGCCTGGTCGGCGCGATGGACAGCTATCCGCCCGATGTCCGCCAC
CAGCGCCAGCGCGAAGCCAGCGAGCTGGCGCTGTACGCCGCCCATCGCCACCCGCTGGCCGGCATGGACCGCATCGACGA
ACAGCAGCTGGACCAGCACCGCCAGCTCAGGCTCAATACCTACAGCGACAAGACGCCTGCCGATTCCGGCCAGCGGCAAT
GGTACGCGCCCAGCTATCTGATGCTGCTGGACATGGCTCGGCTAGGGGTGGGCTGGGCCGAGCTGCCCTGCTGGCTGGTG
CACAGCTTCGGCGGCGGCGAGCTGAAGCAGCTGGATGTGGCCGGCTGGCCCAAACGGATGCCGGTGGACCTGGTATGGGC
GGCCAACAAGCCGCTGGGCGCGGCGGCGGGATGGCTGCTGCAACAGCTAACCGATGGAGCGGAGCAGCGCTAA

Upstream 100 bases:

>100_bases
GTCGCTTGCATCGATCTCTCCCGACTGCTGAAGTTCAATGCCTGGCATTATGATTGGATTTTCGGATACTATAAAAATAC
CAACCATCGGTTAAACCGAT

Downstream 100 bases:

>100_bases
ACGATCAAGACGGCCTCCATCGTCTCCCCCGCTCCGCGGCTTTGCGCCTTGTCGGCGTCAATCCGCCACTCATTGCCATG
GCGACAGGTCCGCAGCGGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MTTSIDTLSAFVYAADLGSFSAAARRLGKSQSTISEAIANLEIDLGSSLFDRGTRAPTLTPAGRLLLPQARQIMAASQDL
RRQAAQLNAGVETRLTIVLSDTFQSRTLESVACRLEERYPLLELECLVGEQEDVLDLILSGRAQLGLVGAMDSYPPDVRH
QRQREASELALYAAHRHPLAGMDRIDEQQLDQHRQLRLNTYSDKTPADSGQRQWYAPSYLMLLDMARLGVGWAELPCWLV
HSFGGGELKQLDVAGWPKRMPVDLVWAANKPLGAAAGWLLQQLTDGAEQR

Sequences:

>Translated_290_residues
MTTSIDTLSAFVYAADLGSFSAAARRLGKSQSTISEAIANLEIDLGSSLFDRGTRAPTLTPAGRLLLPQARQIMAASQDL
RRQAAQLNAGVETRLTIVLSDTFQSRTLESVACRLEERYPLLELECLVGEQEDVLDLILSGRAQLGLVGAMDSYPPDVRH
QRQREASELALYAAHRHPLAGMDRIDEQQLDQHRQLRLNTYSDKTPADSGQRQWYAPSYLMLLDMARLGVGWAELPCWLV
HSFGGGELKQLDVAGWPKRMPVDLVWAANKPLGAAAGWLLQQLTDGAEQR
>Mature_289_residues
TTSIDTLSAFVYAADLGSFSAAARRLGKSQSTISEAIANLEIDLGSSLFDRGTRAPTLTPAGRLLLPQARQIMAASQDLR
RQAAQLNAGVETRLTIVLSDTFQSRTLESVACRLEERYPLLELECLVGEQEDVLDLILSGRAQLGLVGAMDSYPPDVRHQ
RQREASELALYAAHRHPLAGMDRIDEQQLDQHRQLRLNTYSDKTPADSGQRQWYAPSYLMLLDMARLGVGWAELPCWLVH
SFGGGELKQLDVAGWPKRMPVDLVWAANKPLGAAAGWLLQQLTDGAEQR

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=122, Percent_Identity=38.5245901639344, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082024, Length=273, Percent_Identity=27.1062271062271, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789639, Length=144, Percent_Identity=32.6388888888889, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=202, Percent_Identity=25.7425742574257, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786508, Length=149, Percent_Identity=28.8590604026846, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=180, Percent_Identity=28.8888888888889, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=148, Percent_Identity=31.7567567567568, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790262, Length=237, Percent_Identity=29.1139240506329, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31995; Mature: 31864

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSIDTLSAFVYAADLGSFSAAARRLGKSQSTISEAIANLEIDLGSSLFDRGTRAPTLT
CCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCEEECCCHHHHCCCCCCCCC
PAGRLLLPQARQIMAASQDLRRQAAQLNAGVETRLTIVLSDTFQSRTLESVACRLEERYP
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCC
LLELECLVGEQEDVLDLILSGRAQLGLVGAMDSYPPDVRHQRQREASELALYAAHRHPLA
EEEEHEECCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
GMDRIDEQQLDQHRQLRLNTYSDKTPADSGQRQWYAPSYLMLLDMARLGVGWAELPCWLV
CCHHCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHEE
HSFGGGELKQLDVAGWPKRMPVDLVWAANKPLGAAAGWLLQQLTDGAEQR
ECCCCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTSIDTLSAFVYAADLGSFSAAARRLGKSQSTISEAIANLEIDLGSSLFDRGTRAPTLT
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCEEECCCHHHHCCCCCCCCC
PAGRLLLPQARQIMAASQDLRRQAAQLNAGVETRLTIVLSDTFQSRTLESVACRLEERYP
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCC
LLELECLVGEQEDVLDLILSGRAQLGLVGAMDSYPPDVRHQRQREASELALYAAHRHPLA
EEEEHEECCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
GMDRIDEQQLDQHRQLRLNTYSDKTPADSGQRQWYAPSYLMLLDMARLGVGWAELPCWLV
CCHHCCHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHEE
HSFGGGELKQLDVAGWPKRMPVDLVWAANKPLGAAAGWLLQQLTDGAEQR
ECCCCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA