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The map label for this gene is rpoE [H]

Identifier: 34497981

GI number: 34497981

Start: 2719075

End: 2719524

Strand: Direct

Name: rpoE [H]

Synonym: CV_2526

Alternate gene names: 34497981

Gene position: 2719075-2719524 (Clockwise)

Preceding gene: 34497980

Following gene: 34497982

Centisome position: 57.23

GC content: 69.78

Gene sequence:

>450_bases
TTGCGCCGCTACGCGCGGGTGCTGGAACGGGACGCGGCCACGGCGGACGACCTGGTGCAGGACGCGCTGGAACTGGCCTG
GCGCAACTGGCGGCAATGGCGGCCAGGCTCGGATATCCGCCCCTGGCTGTTCAGCATCCTGCACAACCGGCATGTCGACC
ATGTCCGGCGCGCCAGGCCGCCGACAGAGCTGTCCGACGCGGAGTGGGCTGGACTGGCGGTGCCGCCCGGCCACGAGCGC
GAATCGCGGATGCGGGATCTGGTCCGCGTCCTGGCCCAGCTGCCGGACGAACAAAGAGAAGTCCTGCTGCTGGTAGTGGT
GGAGGGCATGCGCTATCAGGACGCGGCCGGCATCCTCGGCGTGCCGGCGGGGACGGTGATGTCGCGCCTGCACCGAGGCC
GGGAGCGGCTGCGCCAATTGATGATGGAACAGGGAGGCATGGAGCCATGA

Upstream 100 bases:

>100_bases
TGGATCTGGCCACGCGCGGCATCGTGCGGGAGATCCAGCCATAGGCCAACAGAATCCGGAGCGCCAGTTTCACCAGCTGC
TGCTGGACAATCTGGGCCGC

Downstream 100 bases:

>100_bases
CCGAGTCGAACGCGGATAAGCTGCAAGCCTATCTGGACGGAGAATTGAGCCCGAGCGAGGCCGAAGCGCTGGAAGCCTGG
CTGGAGCGGCATCCAGAGGC

Product: extracytoplasmic sigma factor EcfR

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MRRYARVLERDAATADDLVQDALELAWRNWRQWRPGSDIRPWLFSILHNRHVDHVRRARPPTELSDAEWAGLAVPPGHER
ESRMRDLVRVLAQLPDEQREVLLLVVVEGMRYQDAAGILGVPAGTVMSRLHRGRERLRQLMMEQGGMEP

Sequences:

>Translated_149_residues
MRRYARVLERDAATADDLVQDALELAWRNWRQWRPGSDIRPWLFSILHNRHVDHVRRARPPTELSDAEWAGLAVPPGHER
ESRMRDLVRVLAQLPDEQREVLLLVVVEGMRYQDAAGILGVPAGTVMSRLHRGRERLRQLMMEQGGMEP
>Mature_149_residues
MRRYARVLERDAATADDLVQDALELAWRNWRQWRPGSDIRPWLFSILHNRHVDHVRRARPPTELSDAEWAGLAVPPGHER
ESRMRDLVRVLAQLPDEQREVLLLVVVEGMRYQDAAGILGVPAGTVMSRLHRGRERLRQLMMEQGGMEP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 17288; Mature: 17288

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRYARVLERDAATADDLVQDALELAWRNWRQWRPGSDIRPWLFSILHNRHVDHVRRARP
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PTELSDAEWAGLAVPPGHERESRMRDLVRVLAQLPDEQREVLLLVVVEGMRYQDAAGILG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCCCCC
VPAGTVMSRLHRGRERLRQLMMEQGGMEP
CCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRRYARVLERDAATADDLVQDALELAWRNWRQWRPGSDIRPWLFSILHNRHVDHVRRARP
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PTELSDAEWAGLAVPPGHERESRMRDLVRVLAQLPDEQREVLLLVVVEGMRYQDAAGILG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHCCCCCCC
VPAGTVMSRLHRGRERLRQLMMEQGGMEP
CCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]