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The map label for this gene is ydhO [H]

Identifier: 34497978

GI number: 34497978

Start: 2716965

End: 2717456

Strand: Direct

Name: ydhO [H]

Synonym: CV_2523

Alternate gene names: 34497978

Gene position: 2716965-2717456 (Clockwise)

Preceding gene: 34497976

Following gene: 34497979

Centisome position: 57.19

GC content: 67.89

Gene sequence:

>492_bases
CTGGCGGCCCTGCTCGCCGCCTGCGGCACCACCCCGGTGAAAACCAGCCAGCACCGCCCGCGACCGGGCAAGCCGGGCGG
CGACACCTCGCTGTCCAACCTCACCGCCGATGGCAACGGCCGCGAAATCCTGCTGTACACGATAGGCCTGCTGGACGGCG
GCTACCAGTTCGGCGGCAACAATCCGGAAGCCGGCCTCGATTGCAGCGGCATGGTCAGCTACATCTACCAGAACGCGGTC
GGCATCCGCCTGCCGCACAACGCCGCGCAGATCGCCGGCATCGCCCGCCCGATCCCGGACAACCAGATGCAGGTCGGCGA
CCTGGTGTTCTTCAACACCATGAACCGGCCGTTCTCGCACATGGGCATCTTCATCGGCGACGGCAAATTCGTCCACGCGC
CGCGCAGCAACAGCACCATACGCGTGGCGCGGCTGGACAATGTCTACTTCGCGCCGCGCTACCAGGGCGCGCGCACCGTG
CTGCGCGCCTGA

Upstream 100 bases:

>100_bases
TACGGAAACGACAGGAGTCCCAGCGACAATGGAAGAAAACCAGCTGATAGACGACGGCGCCGACCGCCGCCGTCTGCTGA
AAGGCGCGGCGCTGGCCGGC

Downstream 100 bases:

>100_bases
GCGCCCGCGCGGGGCCCATCCCCGCGCCTTTGCTTGCCCGGCGGCCTTCGCCGCCGGCATTTCCCCGGCCTCTTTCGCGG
CCCCCGCAAAAAATCTTCCG

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MAALLAACGTTPVKTSQHRPRPGKPGGDTSLSNLTADGNGREILLYTIGLLDGGYQFGGNNPEAGLDCSGMVSYIYQNAV
GIRLPHNAAQIAGIARPIPDNQMQVGDLVFFNTMNRPFSHMGIFIGDGKFVHAPRSNSTIRVARLDNVYFAPRYQGARTV
LRA

Sequences:

>Translated_163_residues
MAALLAACGTTPVKTSQHRPRPGKPGGDTSLSNLTADGNGREILLYTIGLLDGGYQFGGNNPEAGLDCSGMVSYIYQNAV
GIRLPHNAAQIAGIARPIPDNQMQVGDLVFFNTMNRPFSHMGIFIGDGKFVHAPRSNSTIRVARLDNVYFAPRYQGARTV
LRA
>Mature_162_residues
AALLAACGTTPVKTSQHRPRPGKPGGDTSLSNLTADGNGREILLYTIGLLDGGYQFGGNNPEAGLDCSGMVSYIYQNAVG
IRLPHNAAQIAGIARPIPDNQMQVGDLVFFNTMNRPFSHMGIFIGDGKFVHAPRSNSTIRVARLDNVYFAPRYQGARTVL
RA

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=110, Percent_Identity=40, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1786421, Length=110, Percent_Identity=37.2727272727273, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788501, Length=170, Percent_Identity=28.2352941176471, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1788001, Length=107, Percent_Identity=34.5794392523364, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 17476; Mature: 17345

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALLAACGTTPVKTSQHRPRPGKPGGDTSLSNLTADGNGREILLYTIGLLDGGYQFGGN
CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCEECCCC
NPEAGLDCSGMVSYIYQNAVGIRLPHNAAQIAGIARPIPDNQMQVGDLVFFNTMNRPFSH
CCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCCCCEEECEEEEEECCCCCCCC
MGIFIGDGKFVHAPRSNSTIRVARLDNVYFAPRYQGARTVLRA
CCEEEECCEEEECCCCCCEEEEEEECCEEECCCCCCCHHHHCC
>Mature Secondary Structure 
AALLAACGTTPVKTSQHRPRPGKPGGDTSLSNLTADGNGREILLYTIGLLDGGYQFGGN
CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCEECCCC
NPEAGLDCSGMVSYIYQNAVGIRLPHNAAQIAGIARPIPDNQMQVGDLVFFNTMNRPFSH
CCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCCCCEEECEEEEEECCCCCCCC
MGIFIGDGKFVHAPRSNSTIRVARLDNVYFAPRYQGARTVLRA
CCEEEECCEEEECCCCCCEEEEEEECCEEECCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]